miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4032 5' -57.1 NC_001650.1 + 62936 0.66 0.903433
Target:  5'- -gGCGGGGa--CAGGUGGCUcUugUUg -3'
miRNA:   3'- gaUGCCCCcagGUCCACCGAuAugGA- -5'
4032 5' -57.1 NC_001650.1 + 107551 0.66 0.903433
Target:  5'- -cACGGGGGUgCA-GUGGCccaUGUACa- -3'
miRNA:   3'- gaUGCCCCCAgGUcCACCG---AUAUGga -5'
4032 5' -57.1 NC_001650.1 + 165738 0.66 0.903433
Target:  5'- ---gGGGGGcCCGGGgcGGCUcuuagGCCUa -3'
miRNA:   3'- gaugCCCCCaGGUCCa-CCGAua---UGGA- -5'
4032 5' -57.1 NC_001650.1 + 26874 0.66 0.899689
Target:  5'- -aGCGGGGGUgguggugacggagagCUuuaAGGagaGGCUGUACCg -3'
miRNA:   3'- gaUGCCCCCA---------------GG---UCCa--CCGAUAUGGa -5'
4032 5' -57.1 NC_001650.1 + 29054 0.66 0.897148
Target:  5'- -cGCGGGGGguggCCGacguGG-GGgaGUACCUg -3'
miRNA:   3'- gaUGCCCCCa---GGU----CCaCCgaUAUGGA- -5'
4032 5' -57.1 NC_001650.1 + 42591 0.66 0.890641
Target:  5'- -cGCGGGGGcCCccgaggccgaAGGUuucaGaGCUGUGCCa -3'
miRNA:   3'- gaUGCCCCCaGG----------UCCA----C-CGAUAUGGa -5'
4032 5' -57.1 NC_001650.1 + 45084 0.66 0.890641
Target:  5'- -aGCGGGGGUCUccccugagcGGGcugcGGCUugcgGCCg -3'
miRNA:   3'- gaUGCCCCCAGG---------UCCa---CCGAua--UGGa -5'
4032 5' -57.1 NC_001650.1 + 35280 0.66 0.890641
Target:  5'- -gGCGGGGcGggCCGGGgacgGGCgcggGCCa -3'
miRNA:   3'- gaUGCCCC-Ca-GGUCCa---CCGaua-UGGa -5'
4032 5' -57.1 NC_001650.1 + 51291 0.66 0.890641
Target:  5'- -cGCGGGGGgacccUCGGGcGGCUGUAgUCUc -3'
miRNA:   3'- gaUGCCCCCa----GGUCCaCCGAUAU-GGA- -5'
4032 5' -57.1 NC_001650.1 + 5223 0.66 0.883914
Target:  5'- -cAUGGGGGUCCcuGGGagGGaggAUGCCc -3'
miRNA:   3'- gaUGCCCCCAGG--UCCa-CCga-UAUGGa -5'
4032 5' -57.1 NC_001650.1 + 171930 0.66 0.883914
Target:  5'- -cAUGGGGGUCCcuGGGagGGaggAUGCCc -3'
miRNA:   3'- gaUGCCCCCAGG--UCCa-CCga-UAUGGa -5'
4032 5' -57.1 NC_001650.1 + 69213 0.66 0.883914
Target:  5'- ---aGGGGGagcCCAGGUgcgucaGGCUcUGCCUg -3'
miRNA:   3'- gaugCCCCCa--GGUCCA------CCGAuAUGGA- -5'
4032 5' -57.1 NC_001650.1 + 48253 0.66 0.883914
Target:  5'- -gAgGGGGGcugcuUCCAGGcGGCUAgcccCCUa -3'
miRNA:   3'- gaUgCCCCC-----AGGUCCaCCGAUau--GGA- -5'
4032 5' -57.1 NC_001650.1 + 32162 0.67 0.869819
Target:  5'- -gAUGGGGGU-CGGG-GGCgg-GCCUc -3'
miRNA:   3'- gaUGCCCCCAgGUCCaCCGauaUGGA- -5'
4032 5' -57.1 NC_001650.1 + 16440 0.67 0.862459
Target:  5'- -aAUGGGGGcCCGGGggugGGCccaACCg -3'
miRNA:   3'- gaUGCCCCCaGGUCCa---CCGauaUGGa -5'
4032 5' -57.1 NC_001650.1 + 183147 0.67 0.862459
Target:  5'- -aAUGGGGGcCCGGGggugGGCccaACCg -3'
miRNA:   3'- gaUGCCCCCaGGUCCa---CCGauaUGGa -5'
4032 5' -57.1 NC_001650.1 + 160877 0.67 0.862459
Target:  5'- -cACGGGcaGGUCCAGG-GGCcccacGCCg -3'
miRNA:   3'- gaUGCCC--CCAGGUCCaCCGaua--UGGa -5'
4032 5' -57.1 NC_001650.1 + 15721 0.67 0.857947
Target:  5'- aCUGUGGGGGUCUcugcaauuguuuaugAuGUGGCUGcUGCCUa -3'
miRNA:   3'- -GAUGCCCCCAGG---------------UcCACCGAU-AUGGA- -5'
4032 5' -57.1 NC_001650.1 + 182428 0.67 0.857947
Target:  5'- aCUGUGGGGGUCUcugcaauuguuuaugAuGUGGCUGcUGCCUa -3'
miRNA:   3'- -GAUGCCCCCAGG---------------UcCACCGAU-AUGGA- -5'
4032 5' -57.1 NC_001650.1 + 171381 0.67 0.854899
Target:  5'- --uUGGGGGUCCGGGgGGuCUuaaagACCc -3'
miRNA:   3'- gauGCCCCCAGGUCCaCC-GAua---UGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.