miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4033 3' -62.4 NC_001650.1 + 170431 0.66 0.736979
Target:  5'- --aGuGGuGGGU--GGUCCCCCGCa- -3'
miRNA:   3'- ggaCuCCuCCCAguCCAGGGGGCGgg -5'
4033 3' -62.4 NC_001650.1 + 20920 0.66 0.736979
Target:  5'- gCCgUGAGGAGGGUguccacCAuGG-CCaCCGCUCa -3'
miRNA:   3'- -GG-ACUCCUCCCA------GU-CCaGGgGGCGGG- -5'
4033 3' -62.4 NC_001650.1 + 82450 0.66 0.736979
Target:  5'- aCCUGGGcucGGGGUCccugaucuGGaCCCCCaCCCc -3'
miRNA:   3'- -GGACUCc--UCCCAGu-------CCaGGGGGcGGG- -5'
4033 3' -62.4 NC_001650.1 + 68401 0.66 0.736979
Target:  5'- --aGAGGAaGGaCAGGUagUCCCCGCUg -3'
miRNA:   3'- ggaCUCCUcCCaGUCCA--GGGGGCGGg -5'
4033 3' -62.4 NC_001650.1 + 2844 0.66 0.736979
Target:  5'- uCCgcgagGAGGGGGGgagagAGG-CCggCCGCCCg -3'
miRNA:   3'- -GGa----CUCCUCCCag---UCCaGGg-GGCGGG- -5'
4033 3' -62.4 NC_001650.1 + 3724 0.66 0.736979
Target:  5'- --aGuGGuGGGU--GGUCCCCCGCa- -3'
miRNA:   3'- ggaCuCCuCCCAguCCAGGGGGCGgg -5'
4033 3' -62.4 NC_001650.1 + 169551 0.66 0.736979
Target:  5'- uCCgcgagGAGGGGGGgagagAGG-CCggCCGCCCg -3'
miRNA:   3'- -GGa----CUCCUCCCag---UCCaGGg-GGCGGG- -5'
4033 3' -62.4 NC_001650.1 + 24978 0.66 0.736979
Target:  5'- aCCUGGGGu---UCGGGgCCCCCuCCCc -3'
miRNA:   3'- -GGACUCCucccAGUCCaGGGGGcGGG- -5'
4033 3' -62.4 NC_001650.1 + 121580 0.66 0.727813
Target:  5'- cCCaGGGGcucGGGGcUGGG-CUCCCGCCUg -3'
miRNA:   3'- -GGaCUCC---UCCCaGUCCaGGGGGCGGG- -5'
4033 3' -62.4 NC_001650.1 + 160462 0.66 0.727813
Target:  5'- cCCUcGGGcGGGUCuccGcCCCCCGCgCg -3'
miRNA:   3'- -GGAcUCCuCCCAGuc-CaGGGGGCGgG- -5'
4033 3' -62.4 NC_001650.1 + 120499 0.66 0.727813
Target:  5'- uCCUGAGGGuggccuccuucGGGgagCAGGUgCCUcugggCGCCg -3'
miRNA:   3'- -GGACUCCU-----------CCCa--GUCCAgGGG-----GCGGg -5'
4033 3' -62.4 NC_001650.1 + 101754 0.66 0.726892
Target:  5'- uCCaggGGGuGGGGGUCcagaucaGGGaCCCCgaGCCCa -3'
miRNA:   3'- -GGa--CUC-CUCCCAG-------UCCaGGGGg-CGGG- -5'
4033 3' -62.4 NC_001650.1 + 130084 0.66 0.718574
Target:  5'- gCCgggGAGGGGGGagAG--CCgCCCGCCa -3'
miRNA:   3'- -GGa--CUCCUCCCagUCcaGG-GGGCGGg -5'
4033 3' -62.4 NC_001650.1 + 125033 0.66 0.718574
Target:  5'- cCCgggggcgGAGGAcgccGGG-CGGGgCgCCUCGCCCg -3'
miRNA:   3'- -GGa------CUCCU----CCCaGUCCaG-GGGGCGGG- -5'
4033 3' -62.4 NC_001650.1 + 38245 0.66 0.717647
Target:  5'- aUCUG-GGAcgccaacGGGUCccGGGacUUCCUCGCCCg -3'
miRNA:   3'- -GGACuCCU-------CCCAG--UCC--AGGGGGCGGG- -5'
4033 3' -62.4 NC_001650.1 + 125789 0.66 0.709271
Target:  5'- cCCUGAGcccggaggaGAGGGgcgccaucgCGGagggcuacgcGUCCCCgGCCCc -3'
miRNA:   3'- -GGACUC---------CUCCCa--------GUC----------CAGGGGgCGGG- -5'
4033 3' -62.4 NC_001650.1 + 99011 0.66 0.709271
Target:  5'- uUCUGGuGGGGGUUcagguuuggGGGUCUCaugaCGCCCc -3'
miRNA:   3'- -GGACUcCUCCCAG---------UCCAGGGg---GCGGG- -5'
4033 3' -62.4 NC_001650.1 + 163751 0.66 0.708337
Target:  5'- aCUGGGuGAGGGUgGGGggauauguaaaugUaaCCUGCCCg -3'
miRNA:   3'- gGACUC-CUCCCAgUCC-------------AggGGGCGGG- -5'
4033 3' -62.4 NC_001650.1 + 91336 0.66 0.699911
Target:  5'- gUCUGAGGucauauUCAGGaugaaCCCCGCCCc -3'
miRNA:   3'- -GGACUCCuccc--AGUCCag---GGGGCGGG- -5'
4033 3' -62.4 NC_001650.1 + 73558 0.66 0.699911
Target:  5'- gCCcGAGGgggcgcgugcgcGGGGaCGGGUCCCCgGaCUCu -3'
miRNA:   3'- -GGaCUCC------------UCCCaGUCCAGGGGgC-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.