miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4033 5' -52.3 NC_001650.1 + 115218 0.66 0.98633
Target:  5'- ---uGCACAGGCCcgGCCg-CUGCAGa -3'
miRNA:   3'- aacuUGUGUUUGGa-CGGgaGACGUCc -5'
4033 5' -52.3 NC_001650.1 + 81979 0.66 0.984569
Target:  5'- cUGAACGCGcgcuacaaggagAGCgUGuCCCUCUcGguGGg -3'
miRNA:   3'- aACUUGUGU------------UUGgAC-GGGAGA-CguCC- -5'
4033 5' -52.3 NC_001650.1 + 82865 0.66 0.984569
Target:  5'- aUGAAaGCGcGCCUGCCCcCcGaCAGGg -3'
miRNA:   3'- aACUUgUGUuUGGACGGGaGaC-GUCC- -5'
4033 5' -52.3 NC_001650.1 + 144220 0.66 0.984569
Target:  5'- ---uACACGGugCUgaggGCCCUCUGCGa- -3'
miRNA:   3'- aacuUGUGUUugGA----CGGGAGACGUcc -5'
4033 5' -52.3 NC_001650.1 + 40570 0.66 0.984569
Target:  5'- -gGGACGCGGGCUcGCgCgUCUuGCGGGg -3'
miRNA:   3'- aaCUUGUGUUUGGaCG-GgAGA-CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 82583 0.66 0.982641
Target:  5'- -aGGACGCGAGCUcGuUCCUC-GCGGGc -3'
miRNA:   3'- aaCUUGUGUUUGGaC-GGGAGaCGUCC- -5'
4033 5' -52.3 NC_001650.1 + 76394 0.66 0.982641
Target:  5'- cUUGAACACGuGCCUGUCUga-GguGGc -3'
miRNA:   3'- -AACUUGUGUuUGGACGGGagaCguCC- -5'
4033 5' -52.3 NC_001650.1 + 51263 0.66 0.982641
Target:  5'- -cGAGCGCGGACCaccggaggGCUCgcgCcGCGGGg -3'
miRNA:   3'- aaCUUGUGUUUGGa-------CGGGa--GaCGUCC- -5'
4033 5' -52.3 NC_001650.1 + 166980 0.66 0.982439
Target:  5'- -aGAGCACGuACCUgcacagcGCCCcCUGCcGGc -3'
miRNA:   3'- aaCUUGUGUuUGGA-------CGGGaGACGuCC- -5'
4033 5' -52.3 NC_001650.1 + 273 0.66 0.982439
Target:  5'- -aGAGCACGuACCUgcacagcGCCCcCUGCcGGc -3'
miRNA:   3'- aaCUUGUGUuUGGA-------CGGGaGACGuCC- -5'
4033 5' -52.3 NC_001650.1 + 76486 0.66 0.978247
Target:  5'- -aGGACACGGugCcGUCCUUgaGCGGGu -3'
miRNA:   3'- aaCUUGUGUUugGaCGGGAGa-CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 31503 0.66 0.978247
Target:  5'- -aGAugGucAGCCUGCCCUCUcacacaccCAGGa -3'
miRNA:   3'- aaCUugUguUUGGACGGGAGAc-------GUCC- -5'
4033 5' -52.3 NC_001650.1 + 28450 0.66 0.978247
Target:  5'- gUGGGgGCGGccgugcuguGCCUGCCCggCUGCAc- -3'
miRNA:   3'- aACUUgUGUU---------UGGACGGGa-GACGUcc -5'
4033 5' -52.3 NC_001650.1 + 132693 0.66 0.978247
Target:  5'- -aGAaauACAUGGACCUgGCCCUgaaGCAGGu -3'
miRNA:   3'- aaCU---UGUGUUUGGA-CGGGAga-CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 28409 0.67 0.975765
Target:  5'- -cGGGCGgGGAgCUGaCCCUCUaCAGGu -3'
miRNA:   3'- aaCUUGUgUUUgGAC-GGGAGAcGUCC- -5'
4033 5' -52.3 NC_001650.1 + 18314 0.67 0.970189
Target:  5'- -aGAAaaaggGCAAGCCaGCCCaCUGCAGa -3'
miRNA:   3'- aaCUUg----UGUUUGGaCGGGaGACGUCc -5'
4033 5' -52.3 NC_001650.1 + 29501 0.67 0.968351
Target:  5'- cUGGACgaggaugagaccgagACcuAUCUGUaCCUCUGCAGGg -3'
miRNA:   3'- aACUUG---------------UGuuUGGACG-GGAGACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 49741 0.67 0.967081
Target:  5'- -gGAGgGCGuGCUUGCCCUCggUGaCGGGu -3'
miRNA:   3'- aaCUUgUGUuUGGACGGGAG--AC-GUCC- -5'
4033 5' -52.3 NC_001650.1 + 72564 0.67 0.967081
Target:  5'- -aGAACGgGAcCCUGagggaCCUgCUGCAGGc -3'
miRNA:   3'- aaCUUGUgUUuGGACg----GGA-GACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 46055 0.67 0.963751
Target:  5'- -cGAGCucaGGGCC-GCCUUCaGCAGGg -3'
miRNA:   3'- aaCUUGug-UUUGGaCGGGAGaCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.