miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4033 5' -52.3 NC_001650.1 + 158846 1.1 0.005902
Target:  5'- aUUGAACACAAACCUGCCCUCUGCAGGg -3'
miRNA:   3'- -AACUUGUGUUUGGACGGGAGACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 51335 0.85 0.2228
Target:  5'- -aGAAC-CGGACCUGCUUUCUGCAGGu -3'
miRNA:   3'- aaCUUGuGUUUGGACGGGAGACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 158093 0.77 0.567919
Target:  5'- -aGAGCugAAacACCUGCCC-CUGCAGc -3'
miRNA:   3'- aaCUUGugUU--UGGACGGGaGACGUCc -5'
4033 5' -52.3 NC_001650.1 + 50959 0.76 0.599251
Target:  5'- cUGAGCaACGAcuacgugcGCCUGCCCgugugcgagCUGCGGGg -3'
miRNA:   3'- aACUUG-UGUU--------UGGACGGGa--------GACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 153803 0.75 0.662381
Target:  5'- -cGAGCGCcu-CCagggcGCCCUCUGCGGGc -3'
miRNA:   3'- aaCUUGUGuuuGGa----CGGGAGACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 25618 0.74 0.693716
Target:  5'- uUUGAcUACGGGCCcGCCCUCUaCAGGa -3'
miRNA:   3'- -AACUuGUGUUUGGaCGGGAGAcGUCC- -5'
4033 5' -52.3 NC_001650.1 + 111137 0.73 0.774148
Target:  5'- -gGGACGCGcAACCccggGCCCUCU-CAGGg -3'
miRNA:   3'- aaCUUGUGU-UUGGa---CGGGAGAcGUCC- -5'
4033 5' -52.3 NC_001650.1 + 65039 0.72 0.793112
Target:  5'- uUUGAcguccuuCACGAGCUgGCCCUCcUGCGGGc -3'
miRNA:   3'- -AACUu------GUGUUUGGaCGGGAG-ACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 94946 0.72 0.802368
Target:  5'- -gGAGguCGuGCCUGCCCUCUGggcaCAGGc -3'
miRNA:   3'- aaCUUguGUuUGGACGGGAGAC----GUCC- -5'
4033 5' -52.3 NC_001650.1 + 160325 0.72 0.81146
Target:  5'- -cGAACGCGuGCUUGCCCggggagGCGGGc -3'
miRNA:   3'- aaCUUGUGUuUGGACGGGaga---CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 72869 0.72 0.81146
Target:  5'- cUGGGCuCAAACUUgGCCCUCaggauggGCAGGg -3'
miRNA:   3'- aACUUGuGUUUGGA-CGGGAGa------CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 157380 0.71 0.84602
Target:  5'- --aGGCGCAGccguugagGCCcgcgGCCUUCUGCAGGa -3'
miRNA:   3'- aacUUGUGUU--------UGGa---CGGGAGACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 63235 0.71 0.854166
Target:  5'- --cAAgGCGAACgaGCCC-CUGCAGGa -3'
miRNA:   3'- aacUUgUGUUUGgaCGGGaGACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 134047 0.71 0.862099
Target:  5'- -gGGACGCGAGCCccgGCCCagCUuCAGGg -3'
miRNA:   3'- aaCUUGUGUUUGGa--CGGGa-GAcGUCC- -5'
4033 5' -52.3 NC_001650.1 + 158503 0.7 0.884553
Target:  5'- cUGGugACAAaguGCCUGCCCagcuccacccUCaGCAGGc -3'
miRNA:   3'- aACUugUGUU---UGGACGGG----------AGaCGUCC- -5'
4033 5' -52.3 NC_001650.1 + 73765 0.7 0.891572
Target:  5'- aUGAugGCuccgGGCCUcuacaGCCC-CUGCAGGc -3'
miRNA:   3'- aACUugUGu---UUGGA-----CGGGaGACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 95061 0.69 0.911164
Target:  5'- -cGGGCACAGGacCCUGUCCgccagGCGGGa -3'
miRNA:   3'- aaCUUGUGUUU--GGACGGGaga--CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 63917 0.69 0.911164
Target:  5'- -aGAGCcgcuggGCGAGCCUGUCCagggacgcCUGCGGGu -3'
miRNA:   3'- aaCUUG------UGUUUGGACGGGa-------GACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 119932 0.69 0.911164
Target:  5'- -cGAACACGAAggUGCCCcggggcucCUGCGGGu -3'
miRNA:   3'- aaCUUGUGUUUggACGGGa-------GACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 81527 0.69 0.911164
Target:  5'- cUGAACACGgggcAGCCgcgcgagGUCCUCUGCGu- -3'
miRNA:   3'- aACUUGUGU----UUGGa------CGGGAGACGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.