miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4033 5' -52.3 NC_001650.1 + 57088 0.69 0.916605
Target:  5'- -aGAAUACAGACUccCCCUCcuucccuUGCAGGg -3'
miRNA:   3'- aaCUUGUGUUUGGacGGGAG-------ACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 127959 0.69 0.917197
Target:  5'- gUGAACAgGuGCCUGCCCgccaUCUacacccagacccGCGGGa -3'
miRNA:   3'- aACUUGUgUuUGGACGGG----AGA------------CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 131999 0.69 0.917197
Target:  5'- cUGGACAUggGCCUcaagaGCCCcCUGCAc- -3'
miRNA:   3'- aACUUGUGuuUGGA-----CGGGaGACGUcc -5'
4033 5' -52.3 NC_001650.1 + 68803 0.69 0.917197
Target:  5'- gUGGG-GCAGGCCgggGCCCUCgcucgagggGCGGGg -3'
miRNA:   3'- aACUUgUGUUUGGa--CGGGAGa--------CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 175815 0.69 0.928506
Target:  5'- cUGGACACAcuAACCcGCCCggugacCUGgGGGu -3'
miRNA:   3'- aACUUGUGU--UUGGaCGGGa-----GACgUCC- -5'
4033 5' -52.3 NC_001650.1 + 9108 0.69 0.928506
Target:  5'- cUGGACACAcuAACCcGCCCggugacCUGgGGGu -3'
miRNA:   3'- aACUUGUGU--UUGGaCGGGa-----GACgUCC- -5'
4033 5' -52.3 NC_001650.1 + 99041 0.69 0.928506
Target:  5'- aUG-ACGCc--CCUGuCCCUCUGCAGc -3'
miRNA:   3'- aACuUGUGuuuGGAC-GGGAGACGUCc -5'
4033 5' -52.3 NC_001650.1 + 44016 0.69 0.93378
Target:  5'- aUGGACACGGAgCUGCCC-CU-UGGGa -3'
miRNA:   3'- aACUUGUGUUUgGACGGGaGAcGUCC- -5'
4033 5' -52.3 NC_001650.1 + 26110 0.69 0.93378
Target:  5'- ----cCAUggGCCaGCCCcagCUGCAGGg -3'
miRNA:   3'- aacuuGUGuuUGGaCGGGa--GACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 124956 0.69 0.934294
Target:  5'- -gGGGCACcuuCCUGCCCaggacgcagucguccCUGCAGGc -3'
miRNA:   3'- aaCUUGUGuuuGGACGGGa--------------GACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 99851 0.68 0.948094
Target:  5'- ----cCACAGAUCUGCCaggaaCUCUaGCAGGa -3'
miRNA:   3'- aacuuGUGUUUGGACGG-----GAGA-CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 87855 0.68 0.948094
Target:  5'- gUGGACugGAACCUggacugacugggGgCUUCUGCAGa -3'
miRNA:   3'- aACUUGugUUUGGA------------CgGGAGACGUCc -5'
4033 5' -52.3 NC_001650.1 + 101850 0.68 0.951111
Target:  5'- cUGAuCACAucguCCUuguccacccugagcGCCCUCUGcCAGGa -3'
miRNA:   3'- aACUuGUGUuu--GGA--------------CGGGAGAC-GUCC- -5'
4033 5' -52.3 NC_001650.1 + 25408 0.68 0.960192
Target:  5'- -aGGGCgGgGGACCUGaCCCUCcucagggGCAGGa -3'
miRNA:   3'- aaCUUG-UgUUUGGAC-GGGAGa------CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 66477 0.68 0.960192
Target:  5'- gUUGAGCACGAACaCgcaGUCCUCgagcuugcaccGCAGGc -3'
miRNA:   3'- -AACUUGUGUUUG-Ga--CGGGAGa----------CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 46055 0.67 0.963751
Target:  5'- -cGAGCucaGGGCC-GCCUUCaGCAGGg -3'
miRNA:   3'- aaCUUGug-UUUGGaCGGGAGaCGUCC- -5'
4033 5' -52.3 NC_001650.1 + 49741 0.67 0.967081
Target:  5'- -gGAGgGCGuGCUUGCCCUCggUGaCGGGu -3'
miRNA:   3'- aaCUUgUGUuUGGACGGGAG--AC-GUCC- -5'
4033 5' -52.3 NC_001650.1 + 72564 0.67 0.967081
Target:  5'- -aGAACGgGAcCCUGagggaCCUgCUGCAGGc -3'
miRNA:   3'- aaCUUGUgUUuGGACg----GGA-GACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 29501 0.67 0.968351
Target:  5'- cUGGACgaggaugagaccgagACcuAUCUGUaCCUCUGCAGGg -3'
miRNA:   3'- aACUUG---------------UGuuUGGACG-GGAGACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 18314 0.67 0.970189
Target:  5'- -aGAAaaaggGCAAGCCaGCCCaCUGCAGa -3'
miRNA:   3'- aaCUUg----UGUUUGGaCGGGaGACGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.