Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4033 | 5' | -52.3 | NC_001650.1 | + | 273 | 0.66 | 0.982439 |
Target: 5'- -aGAGCACGuACCUgcacagcGCCCcCUGCcGGc -3' miRNA: 3'- aaCUUGUGUuUGGA-------CGGGaGACGuCC- -5' |
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4033 | 5' | -52.3 | NC_001650.1 | + | 9108 | 0.69 | 0.928506 |
Target: 5'- cUGGACACAcuAACCcGCCCggugacCUGgGGGu -3' miRNA: 3'- aACUUGUGU--UUGGaCGGGa-----GACgUCC- -5' |
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4033 | 5' | -52.3 | NC_001650.1 | + | 18314 | 0.67 | 0.970189 |
Target: 5'- -aGAAaaaggGCAAGCCaGCCCaCUGCAGa -3' miRNA: 3'- aaCUUg----UGUUUGGaCGGGaGACGUCc -5' |
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4033 | 5' | -52.3 | NC_001650.1 | + | 25408 | 0.68 | 0.960192 |
Target: 5'- -aGGGCgGgGGACCUGaCCCUCcucagggGCAGGa -3' miRNA: 3'- aaCUUG-UgUUUGGAC-GGGAGa------CGUCC- -5' |
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4033 | 5' | -52.3 | NC_001650.1 | + | 25618 | 0.74 | 0.693716 |
Target: 5'- uUUGAcUACGGGCCcGCCCUCUaCAGGa -3' miRNA: 3'- -AACUuGUGUUUGGaCGGGAGAcGUCC- -5' |
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4033 | 5' | -52.3 | NC_001650.1 | + | 26110 | 0.69 | 0.93378 |
Target: 5'- ----cCAUggGCCaGCCCcagCUGCAGGg -3' miRNA: 3'- aacuuGUGuuUGGaCGGGa--GACGUCC- -5' |
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4033 | 5' | -52.3 | NC_001650.1 | + | 28409 | 0.67 | 0.975765 |
Target: 5'- -cGGGCGgGGAgCUGaCCCUCUaCAGGu -3' miRNA: 3'- aaCUUGUgUUUgGAC-GGGAGAcGUCC- -5' |
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4033 | 5' | -52.3 | NC_001650.1 | + | 28450 | 0.66 | 0.978247 |
Target: 5'- gUGGGgGCGGccgugcuguGCCUGCCCggCUGCAc- -3' miRNA: 3'- aACUUgUGUU---------UGGACGGGa-GACGUcc -5' |
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4033 | 5' | -52.3 | NC_001650.1 | + | 29501 | 0.67 | 0.968351 |
Target: 5'- cUGGACgaggaugagaccgagACcuAUCUGUaCCUCUGCAGGg -3' miRNA: 3'- aACUUG---------------UGuuUGGACG-GGAGACGUCC- -5' |
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4033 | 5' | -52.3 | NC_001650.1 | + | 31503 | 0.66 | 0.978247 |
Target: 5'- -aGAugGucAGCCUGCCCUCUcacacaccCAGGa -3' miRNA: 3'- aaCUugUguUUGGACGGGAGAc-------GUCC- -5' |
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4033 | 5' | -52.3 | NC_001650.1 | + | 40570 | 0.66 | 0.984569 |
Target: 5'- -gGGACGCGGGCUcGCgCgUCUuGCGGGg -3' miRNA: 3'- aaCUUGUGUUUGGaCG-GgAGA-CGUCC- -5' |
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4033 | 5' | -52.3 | NC_001650.1 | + | 44016 | 0.69 | 0.93378 |
Target: 5'- aUGGACACGGAgCUGCCC-CU-UGGGa -3' miRNA: 3'- aACUUGUGUUUgGACGGGaGAcGUCC- -5' |
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4033 | 5' | -52.3 | NC_001650.1 | + | 46055 | 0.67 | 0.963751 |
Target: 5'- -cGAGCucaGGGCC-GCCUUCaGCAGGg -3' miRNA: 3'- aaCUUGug-UUUGGaCGGGAGaCGUCC- -5' |
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4033 | 5' | -52.3 | NC_001650.1 | + | 49741 | 0.67 | 0.967081 |
Target: 5'- -gGAGgGCGuGCUUGCCCUCggUGaCGGGu -3' miRNA: 3'- aaCUUgUGUuUGGACGGGAG--AC-GUCC- -5' |
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4033 | 5' | -52.3 | NC_001650.1 | + | 50959 | 0.76 | 0.599251 |
Target: 5'- cUGAGCaACGAcuacgugcGCCUGCCCgugugcgagCUGCGGGg -3' miRNA: 3'- aACUUG-UGUU--------UGGACGGGa--------GACGUCC- -5' |
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4033 | 5' | -52.3 | NC_001650.1 | + | 51263 | 0.66 | 0.982641 |
Target: 5'- -cGAGCGCGGACCaccggaggGCUCgcgCcGCGGGg -3' miRNA: 3'- aaCUUGUGUUUGGa-------CGGGa--GaCGUCC- -5' |
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4033 | 5' | -52.3 | NC_001650.1 | + | 51335 | 0.85 | 0.2228 |
Target: 5'- -aGAAC-CGGACCUGCUUUCUGCAGGu -3' miRNA: 3'- aaCUUGuGUUUGGACGGGAGACGUCC- -5' |
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4033 | 5' | -52.3 | NC_001650.1 | + | 57088 | 0.69 | 0.916605 |
Target: 5'- -aGAAUACAGACUccCCCUCcuucccuUGCAGGg -3' miRNA: 3'- aaCUUGUGUUUGGacGGGAG-------ACGUCC- -5' |
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4033 | 5' | -52.3 | NC_001650.1 | + | 63235 | 0.71 | 0.854166 |
Target: 5'- --cAAgGCGAACgaGCCC-CUGCAGGa -3' miRNA: 3'- aacUUgUGUUUGgaCGGGaGACGUCC- -5' |
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4033 | 5' | -52.3 | NC_001650.1 | + | 63917 | 0.69 | 0.911164 |
Target: 5'- -aGAGCcgcuggGCGAGCCUGUCCagggacgcCUGCGGGu -3' miRNA: 3'- aaCUUG------UGUUUGGACGGGa-------GACGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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