miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4033 5' -52.3 NC_001650.1 + 65039 0.72 0.793112
Target:  5'- uUUGAcguccuuCACGAGCUgGCCCUCcUGCGGGc -3'
miRNA:   3'- -AACUu------GUGUUUGGaCGGGAG-ACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 66477 0.68 0.960192
Target:  5'- gUUGAGCACGAACaCgcaGUCCUCgagcuugcaccGCAGGc -3'
miRNA:   3'- -AACUUGUGUUUG-Ga--CGGGAGa----------CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 68803 0.69 0.917197
Target:  5'- gUGGG-GCAGGCCgggGCCCUCgcucgagggGCGGGg -3'
miRNA:   3'- aACUUgUGUUUGGa--CGGGAGa--------CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 72564 0.67 0.967081
Target:  5'- -aGAACGgGAcCCUGagggaCCUgCUGCAGGc -3'
miRNA:   3'- aaCUUGUgUUuGGACg----GGA-GACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 72869 0.72 0.81146
Target:  5'- cUGGGCuCAAACUUgGCCCUCaggauggGCAGGg -3'
miRNA:   3'- aACUUGuGUUUGGA-CGGGAGa------CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 73765 0.7 0.891572
Target:  5'- aUGAugGCuccgGGCCUcuacaGCCC-CUGCAGGc -3'
miRNA:   3'- aACUugUGu---UUGGA-----CGGGaGACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 76394 0.66 0.982641
Target:  5'- cUUGAACACGuGCCUGUCUga-GguGGc -3'
miRNA:   3'- -AACUUGUGUuUGGACGGGagaCguCC- -5'
4033 5' -52.3 NC_001650.1 + 76486 0.66 0.978247
Target:  5'- -aGGACACGGugCcGUCCUUgaGCGGGu -3'
miRNA:   3'- aaCUUGUGUUugGaCGGGAGa-CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 81527 0.69 0.911164
Target:  5'- cUGAACACGgggcAGCCgcgcgagGUCCUCUGCGu- -3'
miRNA:   3'- aACUUGUGU----UUGGa------CGGGAGACGUcc -5'
4033 5' -52.3 NC_001650.1 + 81979 0.66 0.984569
Target:  5'- cUGAACGCGcgcuacaaggagAGCgUGuCCCUCUcGguGGg -3'
miRNA:   3'- aACUUGUGU------------UUGgAC-GGGAGA-CguCC- -5'
4033 5' -52.3 NC_001650.1 + 82583 0.66 0.982641
Target:  5'- -aGGACGCGAGCUcGuUCCUC-GCGGGc -3'
miRNA:   3'- aaCUUGUGUUUGGaC-GGGAGaCGUCC- -5'
4033 5' -52.3 NC_001650.1 + 82865 0.66 0.984569
Target:  5'- aUGAAaGCGcGCCUGCCCcCcGaCAGGg -3'
miRNA:   3'- aACUUgUGUuUGGACGGGaGaC-GUCC- -5'
4033 5' -52.3 NC_001650.1 + 87855 0.68 0.948094
Target:  5'- gUGGACugGAACCUggacugacugggGgCUUCUGCAGa -3'
miRNA:   3'- aACUUGugUUUGGA------------CgGGAGACGUCc -5'
4033 5' -52.3 NC_001650.1 + 94946 0.72 0.802368
Target:  5'- -gGAGguCGuGCCUGCCCUCUGggcaCAGGc -3'
miRNA:   3'- aaCUUguGUuUGGACGGGAGAC----GUCC- -5'
4033 5' -52.3 NC_001650.1 + 95061 0.69 0.911164
Target:  5'- -cGGGCACAGGacCCUGUCCgccagGCGGGa -3'
miRNA:   3'- aaCUUGUGUUU--GGACGGGaga--CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 99041 0.69 0.928506
Target:  5'- aUG-ACGCc--CCUGuCCCUCUGCAGc -3'
miRNA:   3'- aACuUGUGuuuGGAC-GGGAGACGUCc -5'
4033 5' -52.3 NC_001650.1 + 99851 0.68 0.948094
Target:  5'- ----cCACAGAUCUGCCaggaaCUCUaGCAGGa -3'
miRNA:   3'- aacuuGUGUUUGGACGG-----GAGA-CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 101850 0.68 0.951111
Target:  5'- cUGAuCACAucguCCUuguccacccugagcGCCCUCUGcCAGGa -3'
miRNA:   3'- aACUuGUGUuu--GGA--------------CGGGAGAC-GUCC- -5'
4033 5' -52.3 NC_001650.1 + 111137 0.73 0.774148
Target:  5'- -gGGACGCGcAACCccggGCCCUCU-CAGGg -3'
miRNA:   3'- aaCUUGUGU-UUGGa---CGGGAGAcGUCC- -5'
4033 5' -52.3 NC_001650.1 + 115218 0.66 0.98633
Target:  5'- ---uGCACAGGCCcgGCCg-CUGCAGa -3'
miRNA:   3'- aacuUGUGUUUGGa-CGGgaGACGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.