miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4033 5' -52.3 NC_001650.1 + 175815 0.69 0.928506
Target:  5'- cUGGACACAcuAACCcGCCCggugacCUGgGGGu -3'
miRNA:   3'- aACUUGUGU--UUGGaCGGGa-----GACgUCC- -5'
4033 5' -52.3 NC_001650.1 + 166980 0.66 0.982439
Target:  5'- -aGAGCACGuACCUgcacagcGCCCcCUGCcGGc -3'
miRNA:   3'- aaCUUGUGUuUGGA-------CGGGaGACGuCC- -5'
4033 5' -52.3 NC_001650.1 + 160325 0.72 0.81146
Target:  5'- -cGAACGCGuGCUUGCCCggggagGCGGGc -3'
miRNA:   3'- aaCUUGUGUuUGGACGGGaga---CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 158846 1.1 0.005902
Target:  5'- aUUGAACACAAACCUGCCCUCUGCAGGg -3'
miRNA:   3'- -AACUUGUGUUUGGACGGGAGACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 158503 0.7 0.884553
Target:  5'- cUGGugACAAaguGCCUGCCCagcuccacccUCaGCAGGc -3'
miRNA:   3'- aACUugUGUU---UGGACGGG----------AGaCGUCC- -5'
4033 5' -52.3 NC_001650.1 + 158093 0.77 0.567919
Target:  5'- -aGAGCugAAacACCUGCCC-CUGCAGc -3'
miRNA:   3'- aaCUUGugUU--UGGACGGGaGACGUCc -5'
4033 5' -52.3 NC_001650.1 + 157380 0.71 0.84602
Target:  5'- --aGGCGCAGccguugagGCCcgcgGCCUUCUGCAGGa -3'
miRNA:   3'- aacUUGUGUU--------UGGa---CGGGAGACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 153803 0.75 0.662381
Target:  5'- -cGAGCGCcu-CCagggcGCCCUCUGCGGGc -3'
miRNA:   3'- aaCUUGUGuuuGGa----CGGGAGACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 144220 0.66 0.984569
Target:  5'- ---uACACGGugCUgaggGCCCUCUGCGa- -3'
miRNA:   3'- aacuUGUGUUugGA----CGGGAGACGUcc -5'
4033 5' -52.3 NC_001650.1 + 134047 0.71 0.862099
Target:  5'- -gGGACGCGAGCCccgGCCCagCUuCAGGg -3'
miRNA:   3'- aaCUUGUGUUUGGa--CGGGa-GAcGUCC- -5'
4033 5' -52.3 NC_001650.1 + 132693 0.66 0.978247
Target:  5'- -aGAaauACAUGGACCUgGCCCUgaaGCAGGu -3'
miRNA:   3'- aaCU---UGUGUUUGGA-CGGGAga-CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 131999 0.69 0.917197
Target:  5'- cUGGACAUggGCCUcaagaGCCCcCUGCAc- -3'
miRNA:   3'- aACUUGUGuuUGGA-----CGGGaGACGUcc -5'
4033 5' -52.3 NC_001650.1 + 127959 0.69 0.917197
Target:  5'- gUGAACAgGuGCCUGCCCgccaUCUacacccagacccGCGGGa -3'
miRNA:   3'- aACUUGUgUuUGGACGGG----AGA------------CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 124956 0.69 0.934294
Target:  5'- -gGGGCACcuuCCUGCCCaggacgcagucguccCUGCAGGc -3'
miRNA:   3'- aaCUUGUGuuuGGACGGGa--------------GACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 119932 0.69 0.911164
Target:  5'- -cGAACACGAAggUGCCCcggggcucCUGCGGGu -3'
miRNA:   3'- aaCUUGUGUUUggACGGGa-------GACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 115218 0.66 0.98633
Target:  5'- ---uGCACAGGCCcgGCCg-CUGCAGa -3'
miRNA:   3'- aacuUGUGUUUGGa-CGGgaGACGUCc -5'
4033 5' -52.3 NC_001650.1 + 111137 0.73 0.774148
Target:  5'- -gGGACGCGcAACCccggGCCCUCU-CAGGg -3'
miRNA:   3'- aaCUUGUGU-UUGGa---CGGGAGAcGUCC- -5'
4033 5' -52.3 NC_001650.1 + 101850 0.68 0.951111
Target:  5'- cUGAuCACAucguCCUuguccacccugagcGCCCUCUGcCAGGa -3'
miRNA:   3'- aACUuGUGUuu--GGA--------------CGGGAGAC-GUCC- -5'
4033 5' -52.3 NC_001650.1 + 99851 0.68 0.948094
Target:  5'- ----cCACAGAUCUGCCaggaaCUCUaGCAGGa -3'
miRNA:   3'- aacuuGUGUUUGGACGG-----GAGA-CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 99041 0.69 0.928506
Target:  5'- aUG-ACGCc--CCUGuCCCUCUGCAGc -3'
miRNA:   3'- aACuUGUGuuuGGAC-GGGAGACGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.