miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4033 5' -52.3 NC_001650.1 + 66477 0.68 0.960192
Target:  5'- gUUGAGCACGAACaCgcaGUCCUCgagcuugcaccGCAGGc -3'
miRNA:   3'- -AACUUGUGUUUG-Ga--CGGGAGa----------CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 57088 0.69 0.916605
Target:  5'- -aGAAUACAGACUccCCCUCcuucccuUGCAGGg -3'
miRNA:   3'- aaCUUGUGUUUGGacGGGAG-------ACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 68803 0.69 0.917197
Target:  5'- gUGGG-GCAGGCCgggGCCCUCgcucgagggGCGGGg -3'
miRNA:   3'- aACUUgUGUUUGGa--CGGGAGa--------CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 127959 0.69 0.917197
Target:  5'- gUGAACAgGuGCCUGCCCgccaUCUacacccagacccGCGGGa -3'
miRNA:   3'- aACUUGUgUuUGGACGGG----AGA------------CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 131999 0.69 0.917197
Target:  5'- cUGGACAUggGCCUcaagaGCCCcCUGCAc- -3'
miRNA:   3'- aACUUGUGuuUGGA-----CGGGaGACGUcc -5'
4033 5' -52.3 NC_001650.1 + 99041 0.69 0.928506
Target:  5'- aUG-ACGCc--CCUGuCCCUCUGCAGc -3'
miRNA:   3'- aACuUGUGuuuGGAC-GGGAGACGUCc -5'
4033 5' -52.3 NC_001650.1 + 9108 0.69 0.928506
Target:  5'- cUGGACACAcuAACCcGCCCggugacCUGgGGGu -3'
miRNA:   3'- aACUUGUGU--UUGGaCGGGa-----GACgUCC- -5'
4033 5' -52.3 NC_001650.1 + 175815 0.69 0.928506
Target:  5'- cUGGACACAcuAACCcGCCCggugacCUGgGGGu -3'
miRNA:   3'- aACUUGUGU--UUGGaCGGGa-----GACgUCC- -5'
4033 5' -52.3 NC_001650.1 + 44016 0.69 0.93378
Target:  5'- aUGGACACGGAgCUGCCC-CU-UGGGa -3'
miRNA:   3'- aACUUGUGUUUgGACGGGaGAcGUCC- -5'
4033 5' -52.3 NC_001650.1 + 119932 0.69 0.911164
Target:  5'- -cGAACACGAAggUGCCCcggggcucCUGCGGGu -3'
miRNA:   3'- aaCUUGUGUUUggACGGGa-------GACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 81527 0.69 0.911164
Target:  5'- cUGAACACGgggcAGCCgcgcgagGUCCUCUGCGu- -3'
miRNA:   3'- aACUUGUGU----UUGGa------CGGGAGACGUcc -5'
4033 5' -52.3 NC_001650.1 + 73765 0.7 0.891572
Target:  5'- aUGAugGCuccgGGCCUcuacaGCCC-CUGCAGGc -3'
miRNA:   3'- aACUugUGu---UUGGA-----CGGGaGACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 51335 0.85 0.2228
Target:  5'- -aGAAC-CGGACCUGCUUUCUGCAGGu -3'
miRNA:   3'- aaCUUGuGUUUGGACGGGAGACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 158093 0.77 0.567919
Target:  5'- -aGAGCugAAacACCUGCCC-CUGCAGc -3'
miRNA:   3'- aaCUUGugUU--UGGACGGGaGACGUCc -5'
4033 5' -52.3 NC_001650.1 + 50959 0.76 0.599251
Target:  5'- cUGAGCaACGAcuacgugcGCCUGCCCgugugcgagCUGCGGGg -3'
miRNA:   3'- aACUUG-UGUU--------UGGACGGGa--------GACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 111137 0.73 0.774148
Target:  5'- -gGGACGCGcAACCccggGCCCUCU-CAGGg -3'
miRNA:   3'- aaCUUGUGU-UUGGa---CGGGAGAcGUCC- -5'
4033 5' -52.3 NC_001650.1 + 65039 0.72 0.793112
Target:  5'- uUUGAcguccuuCACGAGCUgGCCCUCcUGCGGGc -3'
miRNA:   3'- -AACUu------GUGUUUGGaCGGGAG-ACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 157380 0.71 0.84602
Target:  5'- --aGGCGCAGccguugagGCCcgcgGCCUUCUGCAGGa -3'
miRNA:   3'- aacUUGUGUU--------UGGa---CGGGAGACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 63235 0.71 0.854166
Target:  5'- --cAAgGCGAACgaGCCC-CUGCAGGa -3'
miRNA:   3'- aacUUgUGUUUGgaCGGGaGACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 158503 0.7 0.884553
Target:  5'- cUGGugACAAaguGCCUGCCCagcuccacccUCaGCAGGc -3'
miRNA:   3'- aACUugUGUU---UGGACGGG----------AGaCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.