miRNA display CGI


Results 41 - 55 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4033 5' -52.3 NC_001650.1 + 40570 0.66 0.984569
Target:  5'- -gGGACGCGGGCUcGCgCgUCUuGCGGGg -3'
miRNA:   3'- aaCUUGUGUUUGGaCG-GgAGA-CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 101850 0.68 0.951111
Target:  5'- cUGAuCACAucguCCUuguccacccugagcGCCCUCUGcCAGGa -3'
miRNA:   3'- aACUuGUGUuu--GGA--------------CGGGAGAC-GUCC- -5'
4033 5' -52.3 NC_001650.1 + 87855 0.68 0.948094
Target:  5'- gUGGACugGAACCUggacugacugggGgCUUCUGCAGa -3'
miRNA:   3'- aACUUGugUUUGGA------------CgGGAGACGUCc -5'
4033 5' -52.3 NC_001650.1 + 99851 0.68 0.948094
Target:  5'- ----cCACAGAUCUGCCaggaaCUCUaGCAGGa -3'
miRNA:   3'- aacuuGUGUUUGGACGG-----GAGA-CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 153803 0.75 0.662381
Target:  5'- -cGAGCGCcu-CCagggcGCCCUCUGCGGGc -3'
miRNA:   3'- aaCUUGUGuuuGGa----CGGGAGACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 25618 0.74 0.693716
Target:  5'- uUUGAcUACGGGCCcGCCCUCUaCAGGa -3'
miRNA:   3'- -AACUuGUGUUUGGaCGGGAGAcGUCC- -5'
4033 5' -52.3 NC_001650.1 + 94946 0.72 0.802368
Target:  5'- -gGAGguCGuGCCUGCCCUCUGggcaCAGGc -3'
miRNA:   3'- aaCUUguGUuUGGACGGGAGAC----GUCC- -5'
4033 5' -52.3 NC_001650.1 + 72869 0.72 0.81146
Target:  5'- cUGGGCuCAAACUUgGCCCUCaggauggGCAGGg -3'
miRNA:   3'- aACUUGuGUUUGGA-CGGGAGa------CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 160325 0.72 0.81146
Target:  5'- -cGAACGCGuGCUUGCCCggggagGCGGGc -3'
miRNA:   3'- aaCUUGUGUuUGGACGGGaga---CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 134047 0.71 0.862099
Target:  5'- -gGGACGCGAGCCccgGCCCagCUuCAGGg -3'
miRNA:   3'- aaCUUGUGUUUGGa--CGGGa-GAcGUCC- -5'
4033 5' -52.3 NC_001650.1 + 63917 0.69 0.911164
Target:  5'- -aGAGCcgcuggGCGAGCCUGUCCagggacgcCUGCGGGu -3'
miRNA:   3'- aaCUUG------UGUUUGGACGGGa-------GACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 95061 0.69 0.911164
Target:  5'- -cGGGCACAGGacCCUGUCCgccagGCGGGa -3'
miRNA:   3'- aaCUUGUGUUU--GGACGGGaga--CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 26110 0.69 0.93378
Target:  5'- ----cCAUggGCCaGCCCcagCUGCAGGg -3'
miRNA:   3'- aacuuGUGuuUGGaCGGGa--GACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 124956 0.69 0.934294
Target:  5'- -gGGGCACcuuCCUGCCCaggacgcagucguccCUGCAGGc -3'
miRNA:   3'- aaCUUGUGuuuGGACGGGa--------------GACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 82865 0.66 0.984569
Target:  5'- aUGAAaGCGcGCCUGCCCcCcGaCAGGg -3'
miRNA:   3'- aACUUgUGUuUGGACGGGaGaC-GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.