miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4033 5' -52.3 NC_001650.1 + 101850 0.68 0.951111
Target:  5'- cUGAuCACAucguCCUuguccacccugagcGCCCUCUGcCAGGa -3'
miRNA:   3'- aACUuGUGUuu--GGA--------------CGGGAGAC-GUCC- -5'
4033 5' -52.3 NC_001650.1 + 31503 0.66 0.978247
Target:  5'- -aGAugGucAGCCUGCCCUCUcacacaccCAGGa -3'
miRNA:   3'- aaCUugUguUUGGACGGGAGAc-------GUCC- -5'
4033 5' -52.3 NC_001650.1 + 29501 0.67 0.968351
Target:  5'- cUGGACgaggaugagaccgagACcuAUCUGUaCCUCUGCAGGg -3'
miRNA:   3'- aACUUG---------------UGuuUGGACG-GGAGACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 25408 0.68 0.960192
Target:  5'- -aGGGCgGgGGACCUGaCCCUCcucagggGCAGGa -3'
miRNA:   3'- aaCUUG-UgUUUGGAC-GGGAGa------CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 157380 0.71 0.84602
Target:  5'- --aGGCGCAGccguugagGCCcgcgGCCUUCUGCAGGa -3'
miRNA:   3'- aacUUGUGUU--------UGGa---CGGGAGACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 127959 0.69 0.917197
Target:  5'- gUGAACAgGuGCCUGCCCgccaUCUacacccagacccGCGGGa -3'
miRNA:   3'- aACUUGUgUuUGGACGGG----AGA------------CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 158093 0.77 0.567919
Target:  5'- -aGAGCugAAacACCUGCCC-CUGCAGc -3'
miRNA:   3'- aaCUUGugUU--UGGACGGGaGACGUCc -5'
4033 5' -52.3 NC_001650.1 + 81979 0.66 0.984569
Target:  5'- cUGAACGCGcgcuacaaggagAGCgUGuCCCUCUcGguGGg -3'
miRNA:   3'- aACUUGUGU------------UUGgAC-GGGAGA-CguCC- -5'
4033 5' -52.3 NC_001650.1 + 144220 0.66 0.984569
Target:  5'- ---uACACGGugCUgaggGCCCUCUGCGa- -3'
miRNA:   3'- aacuUGUGUUugGA----CGGGAGACGUcc -5'
4033 5' -52.3 NC_001650.1 + 76394 0.66 0.982641
Target:  5'- cUUGAACACGuGCCUGUCUga-GguGGc -3'
miRNA:   3'- -AACUUGUGUuUGGACGGGagaCguCC- -5'
4033 5' -52.3 NC_001650.1 + 68803 0.69 0.917197
Target:  5'- gUGGG-GCAGGCCgggGCCCUCgcucgagggGCGGGg -3'
miRNA:   3'- aACUUgUGUUUGGa--CGGGAGa--------CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 57088 0.69 0.916605
Target:  5'- -aGAAUACAGACUccCCCUCcuucccuUGCAGGg -3'
miRNA:   3'- aaCUUGUGUUUGGacGGGAG-------ACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 119932 0.69 0.911164
Target:  5'- -cGAACACGAAggUGCCCcggggcucCUGCGGGu -3'
miRNA:   3'- aaCUUGUGUUUggACGGGa-------GACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 65039 0.72 0.793112
Target:  5'- uUUGAcguccuuCACGAGCUgGCCCUCcUGCGGGc -3'
miRNA:   3'- -AACUu------GUGUUUGGaCGGGAG-ACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 72564 0.67 0.967081
Target:  5'- -aGAACGgGAcCCUGagggaCCUgCUGCAGGc -3'
miRNA:   3'- aaCUUGUgUUuGGACg----GGA-GACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 76486 0.66 0.978247
Target:  5'- -aGGACACGGugCcGUCCUUgaGCGGGu -3'
miRNA:   3'- aaCUUGUGUUugGaCGGGAGa-CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 132693 0.66 0.978247
Target:  5'- -aGAaauACAUGGACCUgGCCCUgaaGCAGGu -3'
miRNA:   3'- aaCU---UGUGUUUGGA-CGGGAga-CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 273 0.66 0.982439
Target:  5'- -aGAGCACGuACCUgcacagcGCCCcCUGCcGGc -3'
miRNA:   3'- aaCUUGUGUuUGGA-------CGGGaGACGuCC- -5'
4033 5' -52.3 NC_001650.1 + 166980 0.66 0.982439
Target:  5'- -aGAGCACGuACCUgcacagcGCCCcCUGCcGGc -3'
miRNA:   3'- aaCUUGUGUuUGGA-------CGGGaGACGuCC- -5'
4033 5' -52.3 NC_001650.1 + 82583 0.66 0.982641
Target:  5'- -aGGACGCGAGCUcGuUCCUC-GCGGGc -3'
miRNA:   3'- aaCUUGUGUUUGGaC-GGGAGaCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.