miRNA display CGI


Results 41 - 55 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4033 5' -52.3 NC_001650.1 + 51335 0.85 0.2228
Target:  5'- -aGAAC-CGGACCUGCUUUCUGCAGGu -3'
miRNA:   3'- aaCUUGuGUUUGGACGGGAGACGUCC- -5'
4033 5' -52.3 NC_001650.1 + 68803 0.69 0.917197
Target:  5'- gUGGG-GCAGGCCgggGCCCUCgcucgagggGCGGGg -3'
miRNA:   3'- aACUUgUGUUUGGa--CGGGAGa--------CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 127959 0.69 0.917197
Target:  5'- gUGAACAgGuGCCUGCCCgccaUCUacacccagacccGCGGGa -3'
miRNA:   3'- aACUUGUgUuUGGACGGG----AGA------------CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 82583 0.66 0.982641
Target:  5'- -aGGACGCGAGCUcGuUCCUC-GCGGGc -3'
miRNA:   3'- aaCUUGUGUUUGGaC-GGGAGaCGUCC- -5'
4033 5' -52.3 NC_001650.1 + 166980 0.66 0.982439
Target:  5'- -aGAGCACGuACCUgcacagcGCCCcCUGCcGGc -3'
miRNA:   3'- aaCUUGUGUuUGGA-------CGGGaGACGuCC- -5'
4033 5' -52.3 NC_001650.1 + 273 0.66 0.982439
Target:  5'- -aGAGCACGuACCUgcacagcGCCCcCUGCcGGc -3'
miRNA:   3'- aaCUUGUGUuUGGA-------CGGGaGACGuCC- -5'
4033 5' -52.3 NC_001650.1 + 132693 0.66 0.978247
Target:  5'- -aGAaauACAUGGACCUgGCCCUgaaGCAGGu -3'
miRNA:   3'- aaCU---UGUGUUUGGA-CGGGAga-CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 76486 0.66 0.978247
Target:  5'- -aGGACACGGugCcGUCCUUgaGCGGGu -3'
miRNA:   3'- aaCUUGUGUUugGaCGGGAGa-CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 66477 0.68 0.960192
Target:  5'- gUUGAGCACGAACaCgcaGUCCUCgagcuugcaccGCAGGc -3'
miRNA:   3'- -AACUUGUGUUUG-Ga--CGGGAGa----------CGUCC- -5'
4033 5' -52.3 NC_001650.1 + 44016 0.69 0.93378
Target:  5'- aUGGACACGGAgCUGCCC-CU-UGGGa -3'
miRNA:   3'- aACUUGUGUUUgGACGGGaGAcGUCC- -5'
4033 5' -52.3 NC_001650.1 + 175815 0.69 0.928506
Target:  5'- cUGGACACAcuAACCcGCCCggugacCUGgGGGu -3'
miRNA:   3'- aACUUGUGU--UUGGaCGGGa-----GACgUCC- -5'
4033 5' -52.3 NC_001650.1 + 9108 0.69 0.928506
Target:  5'- cUGGACACAcuAACCcGCCCggugacCUGgGGGu -3'
miRNA:   3'- aACUUGUGU--UUGGaCGGGa-----GACgUCC- -5'
4033 5' -52.3 NC_001650.1 + 99041 0.69 0.928506
Target:  5'- aUG-ACGCc--CCUGuCCCUCUGCAGc -3'
miRNA:   3'- aACuUGUGuuuGGAC-GGGAGACGUCc -5'
4033 5' -52.3 NC_001650.1 + 131999 0.69 0.917197
Target:  5'- cUGGACAUggGCCUcaagaGCCCcCUGCAc- -3'
miRNA:   3'- aACUUGUGuuUGGA-----CGGGaGACGUcc -5'
4033 5' -52.3 NC_001650.1 + 158846 1.1 0.005902
Target:  5'- aUUGAACACAAACCUGCCCUCUGCAGGg -3'
miRNA:   3'- -AACUUGUGUUUGGACGGGAGACGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.