miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4034 3' -55.5 NC_001650.1 + 154372 0.66 0.952553
Target:  5'- uGGCCAguCUGAggaaagACUuuUUGGAGCCCGGc -3'
miRNA:   3'- -CUGGU--GACU------UGGcgAACUUCGGGCCc -5'
4034 3' -55.5 NC_001650.1 + 52786 0.66 0.948463
Target:  5'- cGGCgGCggcGGCC-CUcGggGCCCGGGc -3'
miRNA:   3'- -CUGgUGac-UUGGcGAaCuuCGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 19571 0.66 0.948463
Target:  5'- -cCCACcggGAgcccggguGCCGCgc--GGCCCGGGg -3'
miRNA:   3'- cuGGUGa--CU--------UGGCGaacuUCGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 82876 0.66 0.944147
Target:  5'- gGACCAg-GAGgUGCcUGGAGCUgGGGg -3'
miRNA:   3'- -CUGGUgaCUUgGCGaACUUCGGgCCC- -5'
4034 3' -55.5 NC_001650.1 + 35274 0.66 0.944147
Target:  5'- aGACCA--GAuCUGCUcgGuuGCCCGGGa -3'
miRNA:   3'- -CUGGUgaCUuGGCGAa-CuuCGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 16820 0.66 0.944147
Target:  5'- cGGCCAaUGGGCgGCccgaggUGggGUuuGGGg -3'
miRNA:   3'- -CUGGUgACUUGgCGa-----ACuuCGggCCC- -5'
4034 3' -55.5 NC_001650.1 + 183527 0.66 0.944147
Target:  5'- cGGCCAaUGGGCgGCccgaggUGggGUuuGGGg -3'
miRNA:   3'- -CUGGUgACUUGgCGa-----ACuuCGggCCC- -5'
4034 3' -55.5 NC_001650.1 + 89420 0.66 0.9396
Target:  5'- cGGCCuggUUGAACCGgccGAAGCCCacGGGu -3'
miRNA:   3'- -CUGGu--GACUUGGCgaaCUUCGGG--CCC- -5'
4034 3' -55.5 NC_001650.1 + 77036 0.66 0.934823
Target:  5'- aGGCCgcGCUGGGCCuCgggGGAGCCCGu- -3'
miRNA:   3'- -CUGG--UGACUUGGcGaa-CUUCGGGCcc -5'
4034 3' -55.5 NC_001650.1 + 134412 0.66 0.934823
Target:  5'- cGACCACcGAugUGgagGAGGCCCuGGa -3'
miRNA:   3'- -CUGGUGaCUugGCgaaCUUCGGGcCC- -5'
4034 3' -55.5 NC_001650.1 + 111121 0.66 0.934823
Target:  5'- gGACCACcgUGAGg-GC--GAAGCCCGGGu -3'
miRNA:   3'- -CUGGUG--ACUUggCGaaCUUCGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 126993 0.66 0.933839
Target:  5'- -uUCACgagucccauCCGCgggucgGGAGCCCGGGg -3'
miRNA:   3'- cuGGUGacuu-----GGCGaa----CUUCGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 120792 0.67 0.929812
Target:  5'- -cCCACUGGACCGCgccc--CCCGaGGu -3'
miRNA:   3'- cuGGUGACUUGGCGaacuucGGGC-CC- -5'
4034 3' -55.5 NC_001650.1 + 129090 0.67 0.929812
Target:  5'- uGGCCGCgacGGGCuCGCUcccgcgcuuccUGAGacacucccccgcGCCCGGGg -3'
miRNA:   3'- -CUGGUGa--CUUG-GCGA-----------ACUU------------CGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 53396 0.67 0.929812
Target:  5'- cGGCCGCcuccuccuggaGGACCGCc--AGGUCCGGGg -3'
miRNA:   3'- -CUGGUGa----------CUUGGCGaacUUCGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 50380 0.67 0.924568
Target:  5'- uGACCugUGGucuggaGCCGCc---GGCUCGGGc -3'
miRNA:   3'- -CUGGugACU------UGGCGaacuUCGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 79192 0.67 0.91909
Target:  5'- cACCAUcGGG-CGCUgGAGGaCCCGGGg -3'
miRNA:   3'- cUGGUGaCUUgGCGAaCUUC-GGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 61026 0.67 0.91909
Target:  5'- aGCCACUgGGACUGCcucguguaGAGGCCCGa- -3'
miRNA:   3'- cUGGUGA-CUUGGCGaa------CUUCGGGCcc -5'
4034 3' -55.5 NC_001650.1 + 62548 0.67 0.913961
Target:  5'- aGGCCGCcuUGAaggugGCCGCcaggucguccucggGggGCCUGGGc -3'
miRNA:   3'- -CUGGUG--ACU-----UGGCGaa------------CuuCGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 101667 0.67 0.907438
Target:  5'- gGGCCGguacauguagUUGGGCagcaGCagGggGCCCGGGu -3'
miRNA:   3'- -CUGGU----------GACUUGg---CGaaCuuCGGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.