miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4034 3' -55.5 NC_001650.1 + 130843 0.68 0.881399
Target:  5'- cGGCCGCccuGCUGCUcGAGGCcaagaCCGGGg -3'
miRNA:   3'- -CUGGUGacuUGGCGAaCUUCG-----GGCCC- -5'
4034 3' -55.5 NC_001650.1 + 122213 0.7 0.801989
Target:  5'- gGACCGCggcgaggGAGCUGgUgcccGAGGCCgGGGg -3'
miRNA:   3'- -CUGGUGa------CUUGGCgAa---CUUCGGgCCC- -5'
4034 3' -55.5 NC_001650.1 + 143284 0.69 0.82773
Target:  5'- uGCC-CUGAcaucCUGUUcggGGAGCCCGGGg -3'
miRNA:   3'- cUGGuGACUu---GGCGAa--CUUCGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 44306 0.69 0.835972
Target:  5'- uGCCACagGAcaGCCGCgaGcGGCUCGGGu -3'
miRNA:   3'- cUGGUGa-CU--UGGCGaaCuUCGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 116777 0.69 0.844034
Target:  5'- --gCACUGAGCaUGCUcUGGAGaCCGGGg -3'
miRNA:   3'- cugGUGACUUG-GCGA-ACUUCgGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 141205 0.69 0.857304
Target:  5'- gGACC-CUGGaagggaugagaucgGgCGCaucgGGAGCCCGGGg -3'
miRNA:   3'- -CUGGuGACU--------------UgGCGaa--CUUCGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 147782 0.68 0.864844
Target:  5'- cGACCGggGAACaCGCUccUGGAgagccugccgcgacGCCCGGGc -3'
miRNA:   3'- -CUGGUgaCUUG-GCGA--ACUU--------------CGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 21526 0.68 0.866327
Target:  5'- gGGCUACUGcugggagGGCCGCggcugcggUGGA-CCCGGGg -3'
miRNA:   3'- -CUGGUGAC-------UUGGCGa-------ACUUcGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 57383 0.68 0.867066
Target:  5'- uGACCugUGGggccuGCgGCUcccccacccccUGcGGCCCGGGc -3'
miRNA:   3'- -CUGGugACU-----UGgCGA-----------ACuUCGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 58070 0.7 0.801106
Target:  5'- gGGCaCGCUGAugagauccucgcaGCCGCccgccGggGCCUGGGc -3'
miRNA:   3'- -CUG-GUGACU-------------UGGCGaa---CuuCGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 67256 0.7 0.778579
Target:  5'- cGGCCGCUcguagcaguacagggGGAUCGCgUUGGuggggcuGCCCGGGa -3'
miRNA:   3'- -CUGGUGA---------------CUUGGCG-AACUu------CGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 166761 0.7 0.774897
Target:  5'- gGGCCACaaagGGcgGCCGaggagaGggGCCCGGGa -3'
miRNA:   3'- -CUGGUGa---CU--UGGCgaa---CuuCGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 58931 0.76 0.452167
Target:  5'- aGAUagACUGGGgCGCggGAGGCCCGGGa -3'
miRNA:   3'- -CUGg-UGACUUgGCGaaCUUCGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 66855 0.74 0.547177
Target:  5'- gGGCUugGCgGGGCCGCggGAGGCgCCGGGg -3'
miRNA:   3'- -CUGG--UGaCUUGGCGaaCUUCG-GGCCC- -5'
4034 3' -55.5 NC_001650.1 + 126737 0.72 0.696826
Target:  5'- aAUCACUuuuggacggggacGAGCgGCgaGggGCCCGGGg -3'
miRNA:   3'- cUGGUGA-------------CUUGgCGaaCuuCGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 146948 0.72 0.696826
Target:  5'- cGGCCGCUGucAaucagugauucucGCC-CUUGAuuGGCCCGGGg -3'
miRNA:   3'- -CUGGUGAC--U-------------UGGcGAACU--UCGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 47310 0.72 0.706747
Target:  5'- aACCACUcuuuGCUGUUUGAcagauagagauggAGCCCGGGu -3'
miRNA:   3'- cUGGUGAcu--UGGCGAACU-------------UCGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 147615 0.72 0.707736
Target:  5'- aACCGCUacagggGAACCGCUuuUGGgucgcuGGCUCGGGg -3'
miRNA:   3'- cUGGUGA------CUUGGCGA--ACU------UCGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 104909 0.7 0.76467
Target:  5'- aACCACUGAACCcaccauaGCcuccuUUGcGGCCUGGGu -3'
miRNA:   3'- cUGGUGACUUGG-------CG-----AACuUCGGGCCC- -5'
4034 3' -55.5 NC_001650.1 + 54 0.7 0.774897
Target:  5'- gGGCCACaaagGGcgGCCGaggagaGggGCCCGGGa -3'
miRNA:   3'- -CUGGUGa---CU--UGGCgaa---CuuCGGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.