miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4034 5' -55.6 NC_001650.1 + 3369 0.66 0.951907
Target:  5'- aGUCCgGGGUCCaugGGGUGcaGCgGGUGGUc -3'
miRNA:   3'- -CGGGgCCCAGGg--UUUAC--UGaCUACCA- -5'
4034 5' -55.6 NC_001650.1 + 23442 0.66 0.951907
Target:  5'- cCCCCaGGUgCCGGAUGACUGu---- -3'
miRNA:   3'- cGGGGcCCAgGGUUUACUGACuacca -5'
4034 5' -55.6 NC_001650.1 + 170076 0.66 0.951907
Target:  5'- aGUCCgGGGUCCaugGGGUGcaGCgGGUGGUc -3'
miRNA:   3'- -CGGGgCCCAGGg--UUUAC--UGaCUACCA- -5'
4034 5' -55.6 NC_001650.1 + 27948 0.66 0.947778
Target:  5'- gGCCCUGGuGgCCCGcg-GGCUGGUGa- -3'
miRNA:   3'- -CGGGGCC-CaGGGUuuaCUGACUACca -5'
4034 5' -55.6 NC_001650.1 + 146659 0.66 0.947353
Target:  5'- cGCCUCGucccccaucaccaGGUCCaGGAUGGCcuUGGUGGUc -3'
miRNA:   3'- -CGGGGC-------------CCAGGgUUUACUG--ACUACCA- -5'
4034 5' -55.6 NC_001650.1 + 50014 0.66 0.943421
Target:  5'- uGCCCgCGGGggaggcGUGugUGGUGGUg -3'
miRNA:   3'- -CGGG-GCCCaggguuUACugACUACCA- -5'
4034 5' -55.6 NC_001650.1 + 135095 0.66 0.943421
Target:  5'- aCCCUGGGUagCCUcAGUGGCUGGUa-- -3'
miRNA:   3'- cGGGGCCCA--GGGuUUACUGACUAcca -5'
4034 5' -55.6 NC_001650.1 + 173013 0.66 0.938834
Target:  5'- cCCCUGGGUCCCuauugGGCc-AUGGg -3'
miRNA:   3'- cGGGGCCCAGGGuuua-CUGacUACCa -5'
4034 5' -55.6 NC_001650.1 + 6306 0.66 0.938834
Target:  5'- cCCCUGGGUCCCuauugGGCc-AUGGg -3'
miRNA:   3'- cGGGGCCCAGGGuuua-CUGacUACCa -5'
4034 5' -55.6 NC_001650.1 + 179506 0.66 0.934015
Target:  5'- gGCCuCCGGaGcCCCA--UGGCUGGcagGGUg -3'
miRNA:   3'- -CGG-GGCC-CaGGGUuuACUGACUa--CCA- -5'
4034 5' -55.6 NC_001650.1 + 12799 0.66 0.934015
Target:  5'- gGCCuCCGGaGcCCCA--UGGCUGGcagGGUg -3'
miRNA:   3'- -CGG-GGCC-CaGGGUuuACUGACUa--CCA- -5'
4034 5' -55.6 NC_001650.1 + 26280 0.66 0.928962
Target:  5'- uGCCUCaaccacucggGGGUCCCu-GUGACcUGcgGGUu -3'
miRNA:   3'- -CGGGG----------CCCAGGGuuUACUG-ACuaCCA- -5'
4034 5' -55.6 NC_001650.1 + 134245 0.66 0.928962
Target:  5'- gGUgCCGGuGUCCCAGGUGAUcag-GGUc -3'
miRNA:   3'- -CGgGGCC-CAGGGUUUACUGacuaCCA- -5'
4034 5' -55.6 NC_001650.1 + 130745 0.66 0.928962
Target:  5'- gGCCCUGaGGUCCgAGGUGgagaagagGCUGGggccccUGGUg -3'
miRNA:   3'- -CGGGGC-CCAGGgUUUAC--------UGACU------ACCA- -5'
4034 5' -55.6 NC_001650.1 + 149031 0.66 0.928962
Target:  5'- aGCacaCCGGGUCCaGGGUG-CUGGUGuGg -3'
miRNA:   3'- -CGg--GGCCCAGGgUUUACuGACUAC-Ca -5'
4034 5' -55.6 NC_001650.1 + 28543 0.67 0.923676
Target:  5'- gGCCCCGaGGaccuggccucgUCCCGGGacgGGCUGggGGc -3'
miRNA:   3'- -CGGGGC-CC-----------AGGGUUUa--CUGACuaCCa -5'
4034 5' -55.6 NC_001650.1 + 111147 0.67 0.918155
Target:  5'- aCCCCGGGcccUCUCAGGgaggGugUGAggcgGGUc -3'
miRNA:   3'- cGGGGCCC---AGGGUUUa---CugACUa---CCA- -5'
4034 5' -55.6 NC_001650.1 + 114519 0.67 0.918155
Target:  5'- cGCCCCGGGauuUCCuUAAAUGuauCUGG-GGa -3'
miRNA:   3'- -CGGGGCCC---AGG-GUUUACu--GACUaCCa -5'
4034 5' -55.6 NC_001650.1 + 50192 0.67 0.912402
Target:  5'- cGUCCCGGGauacCCCAuGUGACcGAcGGc -3'
miRNA:   3'- -CGGGGCCCa---GGGUuUACUGaCUaCCa -5'
4034 5' -55.6 NC_001650.1 + 50080 0.67 0.906417
Target:  5'- cGCCCCcuuggucuggucGGGUCUCAGGUugaGAUUGAucuUGGg -3'
miRNA:   3'- -CGGGG------------CCCAGGGUUUA---CUGACU---ACCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.