Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4034 | 5' | -55.6 | NC_001650.1 | + | 159890 | 1.1 | 0.003576 |
Target: 5'- gGCCCCGGGUCCCAAAUGACUGAUGGUa -3' miRNA: 3'- -CGGGGCCCAGGGUUUACUGACUACCA- -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 1082 | 0.77 | 0.423632 |
Target: 5'- cCCCCGGGcCCCcauUGGCUuGAUGGUg -3' miRNA: 3'- cGGGGCCCaGGGuuuACUGA-CUACCA- -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 167789 | 0.77 | 0.423632 |
Target: 5'- cCCCCGGGcCCCcauUGGCUuGAUGGUg -3' miRNA: 3'- cGGGGCCCaGGGuuuACUGA-CUACCA- -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 1267 | 0.75 | 0.525641 |
Target: 5'- cCCCCGGGcCCCcauUGGCUaGAUGGg -3' miRNA: 3'- cGGGGCCCaGGGuuuACUGA-CUACCa -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 167974 | 0.75 | 0.525641 |
Target: 5'- cCCCCGGGcCCCcauUGGCUaGAUGGg -3' miRNA: 3'- cGGGGCCCaGGGuuuACUGA-CUACCa -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 178165 | 0.73 | 0.605226 |
Target: 5'- aGCCCCGGG-CCCAAugggGACcGAgggGGa -3' miRNA: 3'- -CGGGGCCCaGGGUUua--CUGaCUa--CCa -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 11458 | 0.73 | 0.605226 |
Target: 5'- aGCCCCGGG-CCCAAugggGACcGAgggGGa -3' miRNA: 3'- -CGGGGCCCaGGGUUua--CUGaCUa--CCa -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 76547 | 0.73 | 0.645692 |
Target: 5'- gGCCaCCGGGUC--GAAUGACagcuUGAUGGUg -3' miRNA: 3'- -CGG-GGCCCAGggUUUACUG----ACUACCA- -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 117939 | 0.72 | 0.655802 |
Target: 5'- uGCCCUGGGUCUCGAaccaGUGGugccugUUGAUGGc -3' miRNA: 3'- -CGGGGCCCAGGGUU----UACU------GACUACCa -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 57216 | 0.71 | 0.744941 |
Target: 5'- cCCCCGGGcUCCCGAcccGCgGAUGGg -3' miRNA: 3'- cGGGGCCC-AGGGUUuacUGaCUACCa -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 36762 | 0.7 | 0.763914 |
Target: 5'- -gCCCGGGUUCUAcaacaccccGGUG-CUGGUGGUg -3' miRNA: 3'- cgGGGCCCAGGGU---------UUACuGACUACCA- -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 152412 | 0.7 | 0.763914 |
Target: 5'- uCCCUGGGUCUUu--UGugUGGUGGc -3' miRNA: 3'- cGGGGCCCAGGGuuuACugACUACCa -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 48003 | 0.7 | 0.772307 |
Target: 5'- cGCCCCGGGgccgCUCAAGUGcauagucACUGAgaaccUGGc -3' miRNA: 3'- -CGGGGCCCa---GGGUUUAC-------UGACU-----ACCa -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 139548 | 0.69 | 0.81781 |
Target: 5'- aGCCCUGGaUCuCCAGGUGAUUGAgaggcuaaGGUa -3' miRNA: 3'- -CGGGGCCcAG-GGUUUACUGACUa-------CCA- -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 68860 | 0.69 | 0.834542 |
Target: 5'- cGCCCCGGG-CCCA--UGGCcGccagacacAUGGUg -3' miRNA: 3'- -CGGGGCCCaGGGUuuACUGaC--------UACCA- -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 105025 | 0.68 | 0.858274 |
Target: 5'- cCCCCGGGUCCUccagcGCccGAUGGUg -3' miRNA: 3'- cGGGGCCCAGGGuuuacUGa-CUACCA- -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 2874 | 0.68 | 0.873106 |
Target: 5'- -gCCCGGGUUCCAcuGUGAgaagGGUGGg -3' miRNA: 3'- cgGGGCCCAGGGUu-UACUga--CUACCa -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 169581 | 0.68 | 0.873106 |
Target: 5'- -gCCCGGGUUCCAcuGUGAgaagGGUGGg -3' miRNA: 3'- cgGGGCCCAGGGUu-UACUga--CUACCa -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 106230 | 0.68 | 0.887094 |
Target: 5'- cCCUCGGGUCCCccgcaccUGAgcUUGGUGGg -3' miRNA: 3'- cGGGGCCCAGGGuuu----ACU--GACUACCa -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 87579 | 0.68 | 0.887094 |
Target: 5'- --gCCGGGcUCCCAcAGUGACUuggGGUGGa -3' miRNA: 3'- cggGGCCC-AGGGU-UUACUGA---CUACCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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