miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4034 5' -55.6 NC_001650.1 + 159890 1.1 0.003576
Target:  5'- gGCCCCGGGUCCCAAAUGACUGAUGGUa -3'
miRNA:   3'- -CGGGGCCCAGGGUUUACUGACUACCA- -5'
4034 5' -55.6 NC_001650.1 + 1082 0.77 0.423632
Target:  5'- cCCCCGGGcCCCcauUGGCUuGAUGGUg -3'
miRNA:   3'- cGGGGCCCaGGGuuuACUGA-CUACCA- -5'
4034 5' -55.6 NC_001650.1 + 167789 0.77 0.423632
Target:  5'- cCCCCGGGcCCCcauUGGCUuGAUGGUg -3'
miRNA:   3'- cGGGGCCCaGGGuuuACUGA-CUACCA- -5'
4034 5' -55.6 NC_001650.1 + 1267 0.75 0.525641
Target:  5'- cCCCCGGGcCCCcauUGGCUaGAUGGg -3'
miRNA:   3'- cGGGGCCCaGGGuuuACUGA-CUACCa -5'
4034 5' -55.6 NC_001650.1 + 167974 0.75 0.525641
Target:  5'- cCCCCGGGcCCCcauUGGCUaGAUGGg -3'
miRNA:   3'- cGGGGCCCaGGGuuuACUGA-CUACCa -5'
4034 5' -55.6 NC_001650.1 + 178165 0.73 0.605226
Target:  5'- aGCCCCGGG-CCCAAugggGACcGAgggGGa -3'
miRNA:   3'- -CGGGGCCCaGGGUUua--CUGaCUa--CCa -5'
4034 5' -55.6 NC_001650.1 + 11458 0.73 0.605226
Target:  5'- aGCCCCGGG-CCCAAugggGACcGAgggGGa -3'
miRNA:   3'- -CGGGGCCCaGGGUUua--CUGaCUa--CCa -5'
4034 5' -55.6 NC_001650.1 + 76547 0.73 0.645692
Target:  5'- gGCCaCCGGGUC--GAAUGACagcuUGAUGGUg -3'
miRNA:   3'- -CGG-GGCCCAGggUUUACUG----ACUACCA- -5'
4034 5' -55.6 NC_001650.1 + 117939 0.72 0.655802
Target:  5'- uGCCCUGGGUCUCGAaccaGUGGugccugUUGAUGGc -3'
miRNA:   3'- -CGGGGCCCAGGGUU----UACU------GACUACCa -5'
4034 5' -55.6 NC_001650.1 + 57216 0.71 0.744941
Target:  5'- cCCCCGGGcUCCCGAcccGCgGAUGGg -3'
miRNA:   3'- cGGGGCCC-AGGGUUuacUGaCUACCa -5'
4034 5' -55.6 NC_001650.1 + 36762 0.7 0.763914
Target:  5'- -gCCCGGGUUCUAcaacaccccGGUG-CUGGUGGUg -3'
miRNA:   3'- cgGGGCCCAGGGU---------UUACuGACUACCA- -5'
4034 5' -55.6 NC_001650.1 + 152412 0.7 0.763914
Target:  5'- uCCCUGGGUCUUu--UGugUGGUGGc -3'
miRNA:   3'- cGGGGCCCAGGGuuuACugACUACCa -5'
4034 5' -55.6 NC_001650.1 + 48003 0.7 0.772307
Target:  5'- cGCCCCGGGgccgCUCAAGUGcauagucACUGAgaaccUGGc -3'
miRNA:   3'- -CGGGGCCCa---GGGUUUAC-------UGACU-----ACCa -5'
4034 5' -55.6 NC_001650.1 + 139548 0.69 0.81781
Target:  5'- aGCCCUGGaUCuCCAGGUGAUUGAgaggcuaaGGUa -3'
miRNA:   3'- -CGGGGCCcAG-GGUUUACUGACUa-------CCA- -5'
4034 5' -55.6 NC_001650.1 + 68860 0.69 0.834542
Target:  5'- cGCCCCGGG-CCCA--UGGCcGccagacacAUGGUg -3'
miRNA:   3'- -CGGGGCCCaGGGUuuACUGaC--------UACCA- -5'
4034 5' -55.6 NC_001650.1 + 105025 0.68 0.858274
Target:  5'- cCCCCGGGUCCUccagcGCccGAUGGUg -3'
miRNA:   3'- cGGGGCCCAGGGuuuacUGa-CUACCA- -5'
4034 5' -55.6 NC_001650.1 + 2874 0.68 0.873106
Target:  5'- -gCCCGGGUUCCAcuGUGAgaagGGUGGg -3'
miRNA:   3'- cgGGGCCCAGGGUu-UACUga--CUACCa -5'
4034 5' -55.6 NC_001650.1 + 169581 0.68 0.873106
Target:  5'- -gCCCGGGUUCCAcuGUGAgaagGGUGGg -3'
miRNA:   3'- cgGGGCCCAGGGUu-UACUga--CUACCa -5'
4034 5' -55.6 NC_001650.1 + 106230 0.68 0.887094
Target:  5'- cCCUCGGGUCCCccgcaccUGAgcUUGGUGGg -3'
miRNA:   3'- cGGGGCCCAGGGuuu----ACU--GACUACCa -5'
4034 5' -55.6 NC_001650.1 + 87579 0.68 0.887094
Target:  5'- --gCCGGGcUCCCAcAGUGACUuggGGUGGa -3'
miRNA:   3'- cggGGCCC-AGGGU-UUACUGA---CUACCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.