miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4034 5' -55.6 NC_001650.1 + 28543 0.67 0.923676
Target:  5'- gGCCCCGaGGaccuggccucgUCCCGGGacgGGCUGggGGc -3'
miRNA:   3'- -CGGGGC-CC-----------AGGGUUUa--CUGACuaCCa -5'
4034 5' -55.6 NC_001650.1 + 26280 0.66 0.928962
Target:  5'- uGCCUCaaccacucggGGGUCCCu-GUGACcUGcgGGUu -3'
miRNA:   3'- -CGGGG----------CCCAGGGuuUACUG-ACuaCCA- -5'
4034 5' -55.6 NC_001650.1 + 134245 0.66 0.928962
Target:  5'- gGUgCCGGuGUCCCAGGUGAUcag-GGUc -3'
miRNA:   3'- -CGgGGCC-CAGGGUUUACUGacuaCCA- -5'
4034 5' -55.6 NC_001650.1 + 149031 0.66 0.928962
Target:  5'- aGCacaCCGGGUCCaGGGUG-CUGGUGuGg -3'
miRNA:   3'- -CGg--GGCCCAGGgUUUACuGACUAC-Ca -5'
4034 5' -55.6 NC_001650.1 + 12799 0.66 0.934015
Target:  5'- gGCCuCCGGaGcCCCA--UGGCUGGcagGGUg -3'
miRNA:   3'- -CGG-GGCC-CaGGGUuuACUGACUa--CCA- -5'
4034 5' -55.6 NC_001650.1 + 179506 0.66 0.934015
Target:  5'- gGCCuCCGGaGcCCCA--UGGCUGGcagGGUg -3'
miRNA:   3'- -CGG-GGCC-CaGGGUuuACUGACUa--CCA- -5'
4034 5' -55.6 NC_001650.1 + 50014 0.66 0.943421
Target:  5'- uGCCCgCGGGggaggcGUGugUGGUGGUg -3'
miRNA:   3'- -CGGG-GCCCaggguuUACugACUACCA- -5'
4034 5' -55.6 NC_001650.1 + 146659 0.66 0.947353
Target:  5'- cGCCUCGucccccaucaccaGGUCCaGGAUGGCcuUGGUGGUc -3'
miRNA:   3'- -CGGGGC-------------CCAGGgUUUACUG--ACUACCA- -5'
4034 5' -55.6 NC_001650.1 + 27948 0.66 0.947778
Target:  5'- gGCCCUGGuGgCCCGcg-GGCUGGUGa- -3'
miRNA:   3'- -CGGGGCC-CaGGGUuuaCUGACUACca -5'
4034 5' -55.6 NC_001650.1 + 50080 0.67 0.906417
Target:  5'- cGCCCCcuuggucuggucGGGUCUCAGGUugaGAUUGAucuUGGg -3'
miRNA:   3'- -CGGGG------------CCCAGGGUUUA---CUGACU---ACCa -5'
4034 5' -55.6 NC_001650.1 + 173843 0.67 0.89376
Target:  5'- cUCCCGGGggUCUCAAAUG-CgGGUGGg -3'
miRNA:   3'- cGGGGCCC--AGGGUUUACuGaCUACCa -5'
4034 5' -55.6 NC_001650.1 + 7136 0.67 0.89376
Target:  5'- cUCCCGGGggUCUCAAAUG-CgGGUGGg -3'
miRNA:   3'- cGGGGCCC--AGGGUUUACuGaCUACCa -5'
4034 5' -55.6 NC_001650.1 + 178165 0.73 0.605226
Target:  5'- aGCCCCGGG-CCCAAugggGACcGAgggGGa -3'
miRNA:   3'- -CGGGGCCCaGGGUUua--CUGaCUa--CCa -5'
4034 5' -55.6 NC_001650.1 + 57216 0.71 0.744941
Target:  5'- cCCCCGGGcUCCCGAcccGCgGAUGGg -3'
miRNA:   3'- cGGGGCCC-AGGGUUuacUGaCUACCa -5'
4034 5' -55.6 NC_001650.1 + 139548 0.69 0.81781
Target:  5'- aGCCCUGGaUCuCCAGGUGAUUGAgaggcuaaGGUa -3'
miRNA:   3'- -CGGGGCCcAG-GGUUUACUGACUa-------CCA- -5'
4034 5' -55.6 NC_001650.1 + 105025 0.68 0.858274
Target:  5'- cCCCCGGGUCCUccagcGCccGAUGGUg -3'
miRNA:   3'- cGGGGCCCAGGGuuuacUGa-CUACCA- -5'
4034 5' -55.6 NC_001650.1 + 2874 0.68 0.873106
Target:  5'- -gCCCGGGUUCCAcuGUGAgaagGGUGGg -3'
miRNA:   3'- cgGGGCCCAGGGUu-UACUga--CUACCa -5'
4034 5' -55.6 NC_001650.1 + 169581 0.68 0.873106
Target:  5'- -gCCCGGGUUCCAcuGUGAgaagGGUGGg -3'
miRNA:   3'- cgGGGCCCAGGGUu-UACUga--CUACCa -5'
4034 5' -55.6 NC_001650.1 + 87579 0.68 0.887094
Target:  5'- --gCCGGGcUCCCAcAGUGACUuggGGUGGa -3'
miRNA:   3'- cggGGCCC-AGGGU-UUACUGA---CUACCa -5'
4034 5' -55.6 NC_001650.1 + 106230 0.68 0.887094
Target:  5'- cCCUCGGGUCCCccgcaccUGAgcUUGGUGGg -3'
miRNA:   3'- cGGGGCCCAGGGuuu----ACU--GACUACCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.