Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4034 | 5' | -55.6 | NC_001650.1 | + | 178165 | 0.73 | 0.605226 |
Target: 5'- aGCCCCGGG-CCCAAugggGACcGAgggGGa -3' miRNA: 3'- -CGGGGCCCaGGGUUua--CUGaCUa--CCa -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 179506 | 0.66 | 0.934015 |
Target: 5'- gGCCuCCGGaGcCCCA--UGGCUGGcagGGUg -3' miRNA: 3'- -CGG-GGCC-CaGGGUuuACUGACUa--CCA- -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 146659 | 0.66 | 0.947353 |
Target: 5'- cGCCUCGucccccaucaccaGGUCCaGGAUGGCcuUGGUGGUc -3' miRNA: 3'- -CGGGGC-------------CCAGGgUUUACUG--ACUACCA- -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 170076 | 0.66 | 0.951907 |
Target: 5'- aGUCCgGGGUCCaugGGGUGcaGCgGGUGGUc -3' miRNA: 3'- -CGGGgCCCAGGg--UUUAC--UGaCUACCA- -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 2874 | 0.68 | 0.873106 |
Target: 5'- -gCCCGGGUUCCAcuGUGAgaagGGUGGg -3' miRNA: 3'- cgGGGCCCAGGGUu-UACUga--CUACCa -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 169581 | 0.68 | 0.873106 |
Target: 5'- -gCCCGGGUUCCAcuGUGAgaagGGUGGg -3' miRNA: 3'- cgGGGCCCAGGGUu-UACUga--CUACCa -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 106230 | 0.68 | 0.887094 |
Target: 5'- cCCUCGGGUCCCccgcaccUGAgcUUGGUGGg -3' miRNA: 3'- cGGGGCCCAGGGuuu----ACU--GACUACCa -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 7136 | 0.67 | 0.89376 |
Target: 5'- cUCCCGGGggUCUCAAAUG-CgGGUGGg -3' miRNA: 3'- cGGGGCCC--AGGGUUUACuGaCUACCa -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 28543 | 0.67 | 0.923676 |
Target: 5'- gGCCCCGaGGaccuggccucgUCCCGGGacgGGCUGggGGc -3' miRNA: 3'- -CGGGGC-CC-----------AGGGUUUa--CUGACuaCCa -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 12799 | 0.66 | 0.934015 |
Target: 5'- gGCCuCCGGaGcCCCA--UGGCUGGcagGGUg -3' miRNA: 3'- -CGG-GGCC-CaGGGUuuACUGACUa--CCA- -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 26280 | 0.66 | 0.928962 |
Target: 5'- uGCCUCaaccacucggGGGUCCCu-GUGACcUGcgGGUu -3' miRNA: 3'- -CGGGG----------CCCAGGGuuUACUG-ACuaCCA- -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 50080 | 0.67 | 0.906417 |
Target: 5'- cGCCCCcuuggucuggucGGGUCUCAGGUugaGAUUGAucuUGGg -3' miRNA: 3'- -CGGGG------------CCCAGGGUUUA---CUGACU---ACCa -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 57216 | 0.71 | 0.744941 |
Target: 5'- cCCCCGGGcUCCCGAcccGCgGAUGGg -3' miRNA: 3'- cGGGGCCC-AGGGUUuacUGaCUACCa -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 134245 | 0.66 | 0.928962 |
Target: 5'- gGUgCCGGuGUCCCAGGUGAUcag-GGUc -3' miRNA: 3'- -CGgGGCC-CAGGGUUUACUGacuaCCA- -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 139548 | 0.69 | 0.81781 |
Target: 5'- aGCCCUGGaUCuCCAGGUGAUUGAgaggcuaaGGUa -3' miRNA: 3'- -CGGGGCCcAG-GGUUUACUGACUa-------CCA- -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 173843 | 0.67 | 0.89376 |
Target: 5'- cUCCCGGGggUCUCAAAUG-CgGGUGGg -3' miRNA: 3'- cGGGGCCC--AGGGUUUACuGaCUACCa -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 149031 | 0.66 | 0.928962 |
Target: 5'- aGCacaCCGGGUCCaGGGUG-CUGGUGuGg -3' miRNA: 3'- -CGg--GGCCCAGGgUUUACuGACUAC-Ca -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 50014 | 0.66 | 0.943421 |
Target: 5'- uGCCCgCGGGggaggcGUGugUGGUGGUg -3' miRNA: 3'- -CGGG-GCCCaggguuUACugACUACCA- -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 105025 | 0.68 | 0.858274 |
Target: 5'- cCCCCGGGUCCUccagcGCccGAUGGUg -3' miRNA: 3'- cGGGGCCCAGGGuuuacUGa-CUACCA- -5' |
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4034 | 5' | -55.6 | NC_001650.1 | + | 87579 | 0.68 | 0.887094 |
Target: 5'- --gCCGGGcUCCCAcAGUGACUuggGGUGGa -3' miRNA: 3'- cggGGCCC-AGGGU-UUACUGA---CUACCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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