Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 4035 | 5' | -43.6 | NC_001650.1 | + | 83245 | 0.66 | 1 |
|
Target: 5'- gGCGuUGAUgagGCACUcgugGUAGAGGGUGa -3' miRNA: 3'- aCGU-ACUAaagUGUGA----CAUUUCUCAC- -5' |
|||||||
| 4035 | 5' | -43.6 | NC_001650.1 | + | 45813 | 0.69 | 0.999992 |
|
Target: 5'- gGCAUGuuauuUUUUACGCUGUGuugggcAGGAGg- -3' miRNA: 3'- aCGUACu----AAAGUGUGACAU------UUCUCac -5' |
|||||||
| 4035 | 5' | -43.6 | NC_001650.1 | + | 2873 | 0.7 | 0.999956 |
|
Target: 5'- cGCccGggUUC-CACUGUGAgaAGGGUGg -3' miRNA: 3'- aCGuaCuaAAGuGUGACAUU--UCUCAC- -5' |
|||||||
| 4035 | 5' | -43.6 | NC_001650.1 | + | 169580 | 0.7 | 0.999956 |
|
Target: 5'- cGCccGggUUC-CACUGUGAgaAGGGUGg -3' miRNA: 3'- aCGuaCuaAAGuGUGACAUU--UCUCAC- -5' |
|||||||
| 4035 | 5' | -43.6 | NC_001650.1 | + | 80764 | 0.7 | 0.999941 |
|
Target: 5'- cUGCGUGAUgcUgGCACUGUGGacGGAGc- -3' miRNA: 3'- -ACGUACUAa-AgUGUGACAUU--UCUCac -5' |
|||||||
| 4035 | 5' | -43.6 | NC_001650.1 | + | 51457 | 0.72 | 0.999242 |
|
Target: 5'- aGCGUGGccgUCACGgUGguggGAGGGGUGa -3' miRNA: 3'- aCGUACUaa-AGUGUgACa---UUUCUCAC- -5' |
|||||||
| 4035 | 5' | -43.6 | NC_001650.1 | + | 122373 | 0.76 | 0.986221 |
|
Target: 5'- cUGCGUGAUucUUCucaGCUGUGGAGAGa- -3' miRNA: 3'- -ACGUACUA--AAGug-UGACAUUUCUCac -5' |
|||||||
| 4035 | 5' | -43.6 | NC_001650.1 | + | 22426 | 0.87 | 0.630374 |
|
Target: 5'- -aCAUGAUUUCACACUGUAAAGAaUGg -3' miRNA: 3'- acGUACUAAAGUGUGACAUUUCUcAC- -5' |
|||||||
| 4035 | 5' | -43.6 | NC_001650.1 | + | 161829 | 1.12 | 0.037704 |
|
Target: 5'- cUGCAUGAUUUCACACUGUAAAGAGUGg -3' miRNA: 3'- -ACGUACUAAAGUGUGACAUUUCUCAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home