miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4036 3' -45 NC_001650.1 + 109271 0.66 0.999998
Target:  5'- ---gGCGAuaguGggGGGCGCCCCgcucgucgcccuggCCAa -3'
miRNA:   3'- aaaaUGUUuu--CuuUUCGUGGGGa-------------GGU- -5'
4036 3' -45 NC_001650.1 + 117467 0.66 0.999997
Target:  5'- ---gGCGugcGGcgGAGCGCCCC-CCAc -3'
miRNA:   3'- aaaaUGUuu-UCuuUUCGUGGGGaGGU- -5'
4036 3' -45 NC_001650.1 + 123005 0.66 0.999997
Target:  5'- ---gGCGGGGGucAGGCaACCCCcCCAc -3'
miRNA:   3'- aaaaUGUUUUCuuUUCG-UGGGGaGGU- -5'
4036 3' -45 NC_001650.1 + 95508 0.66 0.999997
Target:  5'- ---------cGAGGAGC-CCCCUCCc -3'
miRNA:   3'- aaaauguuuuCUUUUCGuGGGGAGGu -5'
4036 3' -45 NC_001650.1 + 108748 0.66 0.999997
Target:  5'- ---cGCcAGAGGAGGGCAgCCgUUCCAg -3'
miRNA:   3'- aaaaUGuUUUCUUUUCGU-GGgGAGGU- -5'
4036 3' -45 NC_001650.1 + 141017 0.66 0.999997
Target:  5'- ---gGCAGAAGAGcuacacGCcCCCCUCUg -3'
miRNA:   3'- aaaaUGUUUUCUUuu----CGuGGGGAGGu -5'
4036 3' -45 NC_001650.1 + 128849 0.66 0.999997
Target:  5'- --cUGCGucucAAGGAGAGGCucagggagcugGCCuCCUCCGa -3'
miRNA:   3'- aaaAUGU----UUUCUUUUCG-----------UGG-GGAGGU- -5'
4036 3' -45 NC_001650.1 + 136049 0.66 0.999997
Target:  5'- ---cACGAGGGGcagAGAGUACUCCcCCAg -3'
miRNA:   3'- aaaaUGUUUUCU---UUUCGUGGGGaGGU- -5'
4036 3' -45 NC_001650.1 + 145683 0.66 0.999997
Target:  5'- --gUACAGcuggcAGGAGAGCuCCCCgccgCCAc -3'
miRNA:   3'- aaaAUGUUu----UCUUUUCGuGGGGa---GGU- -5'
4036 3' -45 NC_001650.1 + 157463 0.66 0.999997
Target:  5'- ---aGCcAAAGAgcugccugGAGGCggcgcacaGCCCCUCCAg -3'
miRNA:   3'- aaaaUGuUUUCU--------UUUCG--------UGGGGAGGU- -5'
4036 3' -45 NC_001650.1 + 130786 0.66 0.999997
Target:  5'- ---gGCAGAAGAGcuacacGCcCCCCUCUg -3'
miRNA:   3'- aaaaUGUUUUCUUuu----CGuGGGGAGGu -5'
4036 3' -45 NC_001650.1 + 141938 0.66 0.999996
Target:  5'- ---cGCGGcAGggGGGCAaacCCCCUCg- -3'
miRNA:   3'- aaaaUGUUuUCuuUUCGU---GGGGAGgu -5'
4036 3' -45 NC_001650.1 + 79120 0.66 0.999996
Target:  5'- ---gGCGGGAGGAGGGCcaguCCCCUg-- -3'
miRNA:   3'- aaaaUGUUUUCUUUUCGu---GGGGAggu -5'
4036 3' -45 NC_001650.1 + 112471 0.66 0.999996
Target:  5'- ---cACGugGGAGAGGCACgCCgCCGu -3'
miRNA:   3'- aaaaUGUuuUCUUUUCGUGgGGaGGU- -5'
4036 3' -45 NC_001650.1 + 74252 0.66 0.999996
Target:  5'- ----cCAGGAGAGGgugggcucuguGGUACCCCUCa- -3'
miRNA:   3'- aaaauGUUUUCUUU-----------UCGUGGGGAGgu -5'
4036 3' -45 NC_001650.1 + 160437 0.66 0.999994
Target:  5'- ---cACAAAGGAcuuGAugucAGCGCCCC-CCu -3'
miRNA:   3'- aaaaUGUUUUCU---UU----UCGUGGGGaGGu -5'
4036 3' -45 NC_001650.1 + 152187 0.66 0.999994
Target:  5'- ---aGCAccAGggGGGCAguCCCCUCg- -3'
miRNA:   3'- aaaaUGUuuUCuuUUCGU--GGGGAGgu -5'
4036 3' -45 NC_001650.1 + 102644 0.66 0.999994
Target:  5'- --cUGCAgacGAAGAggagGAGGgGCCCCUCa- -3'
miRNA:   3'- aaaAUGU---UUUCU----UUUCgUGGGGAGgu -5'
4036 3' -45 NC_001650.1 + 84724 0.66 0.999994
Target:  5'- --gUGCAAGcuGGAGGAGUucACCuUCUCCAa -3'
miRNA:   3'- aaaAUGUUU--UCUUUUCG--UGG-GGAGGU- -5'
4036 3' -45 NC_001650.1 + 128742 0.66 0.999994
Target:  5'- ---cGCGAgggGAGggGGGCGCCgUgUCCAg -3'
miRNA:   3'- aaaaUGUU---UUCuuUUCGUGG-GgAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.