miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4036 3' -45 NC_001650.1 + 132887 0.66 0.999993
Target:  5'- ---aGCGGGAGGugguggaggcgguGGCGCCCgCUCCGc -3'
miRNA:   3'- aaaaUGUUUUCUuu-----------UCGUGGG-GAGGU- -5'
4036 3' -45 NC_001650.1 + 134723 0.66 0.999992
Target:  5'- ---gGCGGcuGAGAGGCggACCCC-CCAg -3'
miRNA:   3'- aaaaUGUUuuCUUUUCG--UGGGGaGGU- -5'
4036 3' -45 NC_001650.1 + 121078 0.66 0.999992
Target:  5'- ---cGCGGcgcGggGGGCGCCCgUCCu -3'
miRNA:   3'- aaaaUGUUuu-CuuUUCGUGGGgAGGu -5'
4036 3' -45 NC_001650.1 + 145407 0.66 0.999992
Target:  5'- ---cGCGugGGGGuGGUAgCCCUCCAg -3'
miRNA:   3'- aaaaUGUuuUCUUuUCGUgGGGAGGU- -5'
4036 3' -45 NC_001650.1 + 124157 0.66 0.999992
Target:  5'- --cUGCcgauGGGAAcAGCGCCCCaCCAc -3'
miRNA:   3'- aaaAUGuu--UUCUUuUCGUGGGGaGGU- -5'
4036 3' -45 NC_001650.1 + 132228 0.66 0.999992
Target:  5'- --aUGCAAGGGAAu-GUACCCCcaacgCCu -3'
miRNA:   3'- aaaAUGUUUUCUUuuCGUGGGGa----GGu -5'
4036 3' -45 NC_001650.1 + 48388 0.67 0.999988
Target:  5'- ---gACGGGGGGAGgacggugcccugcGGCaACCCCUUCAa -3'
miRNA:   3'- aaaaUGUUUUCUUU-------------UCG-UGGGGAGGU- -5'
4036 3' -45 NC_001650.1 + 153659 0.67 0.999988
Target:  5'- ---aGCAu--GGAGAGCACgCUCUCCc -3'
miRNA:   3'- aaaaUGUuuuCUUUUCGUG-GGGAGGu -5'
4036 3' -45 NC_001650.1 + 90733 0.67 0.999988
Target:  5'- ---aGCAuGGAGGAGAGCACgcacaUCUCCAg -3'
miRNA:   3'- aaaaUGU-UUUCUUUUCGUGg----GGAGGU- -5'
4036 3' -45 NC_001650.1 + 144858 0.67 0.999988
Target:  5'- ---cACAgcAGAGAAGGGUAuccaucucuCCCCUCCc -3'
miRNA:   3'- aaaaUGU--UUUCUUUUCGU---------GGGGAGGu -5'
4036 3' -45 NC_001650.1 + 10522 0.67 0.999988
Target:  5'- --cUACAccAAAuGAAGAcCACCCCUCUAc -3'
miRNA:   3'- aaaAUGU--UUU-CUUUUcGUGGGGAGGU- -5'
4036 3' -45 NC_001650.1 + 177229 0.67 0.999988
Target:  5'- --cUACAccAAAuGAAGAcCACCCCUCUAc -3'
miRNA:   3'- aaaAUGU--UUU-CUUUUcGUGGGGAGGU- -5'
4036 3' -45 NC_001650.1 + 26440 0.67 0.999988
Target:  5'- --gUGgAGGAGAAcguGGGCACCCaggCCAg -3'
miRNA:   3'- aaaAUgUUUUCUU---UUCGUGGGga-GGU- -5'
4036 3' -45 NC_001650.1 + 82620 0.67 0.999988
Target:  5'- --aUGgGGAAGAGGGGCugCCCgCUg -3'
miRNA:   3'- aaaAUgUUUUCUUUUCGugGGGaGGu -5'
4036 3' -45 NC_001650.1 + 166188 0.67 0.999987
Target:  5'- --gUGCAuuuau---GCACCCCUCCu -3'
miRNA:   3'- aaaAUGUuuucuuuuCGUGGGGAGGu -5'
4036 3' -45 NC_001650.1 + 101937 0.67 0.999983
Target:  5'- ---gGCGAgcGggGGGC-UCCCUCCu -3'
miRNA:   3'- aaaaUGUUuuCuuUUCGuGGGGAGGu -5'
4036 3' -45 NC_001650.1 + 47207 0.67 0.999983
Target:  5'- ----cCAGuuuGGGAGGUGCCUCUCCAu -3'
miRNA:   3'- aaaauGUUuu-CUUUUCGUGGGGAGGU- -5'
4036 3' -45 NC_001650.1 + 106782 0.67 0.999983
Target:  5'- -----aAGAAGAcucGCugCCCUCCAu -3'
miRNA:   3'- aaaaugUUUUCUuuuCGugGGGAGGU- -5'
4036 3' -45 NC_001650.1 + 86590 0.67 0.999983
Target:  5'- ----uCGucGGAGGAGCcCUCCUCCAg -3'
miRNA:   3'- aaaauGUuuUCUUUUCGuGGGGAGGU- -5'
4036 3' -45 NC_001650.1 + 132244 0.67 0.999977
Target:  5'- cUUUAUAGAcucAGAGCGCCCCUgggccCCAa -3'
miRNA:   3'- aAAAUGUUUucuUUUCGUGGGGA-----GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.