miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4036 3' -45 NC_001650.1 + 6227 0.69 0.999767
Target:  5'- ---cAUAAccGGAucGCACCCCUCUu -3'
miRNA:   3'- aaaaUGUUuuCUUuuCGUGGGGAGGu -5'
4036 3' -45 NC_001650.1 + 6446 0.68 0.999941
Target:  5'- ---gGCAGAGGGGAuaugGGCAgCCC-CCAu -3'
miRNA:   3'- aaaaUGUUUUCUUU----UCGUgGGGaGGU- -5'
4036 3' -45 NC_001650.1 + 7577 0.68 0.999895
Target:  5'- cUUUGCAAcgu--GGGCGCgCCUCCAa -3'
miRNA:   3'- aAAAUGUUuucuuUUCGUGgGGAGGU- -5'
4036 3' -45 NC_001650.1 + 8630 0.7 0.999517
Target:  5'- -aUUACucAGGGAGGGCGCgCCgCUCCc -3'
miRNA:   3'- aaAAUGuuUUCUUUUCGUG-GG-GAGGu -5'
4036 3' -45 NC_001650.1 + 8876 0.69 0.999619
Target:  5'- --cUGCcuGGGAGcGGCGCgCCCUCCc -3'
miRNA:   3'- aaaAUGuuUUCUUuUCGUG-GGGAGGu -5'
4036 3' -45 NC_001650.1 + 10018 0.7 0.998842
Target:  5'- -aUUAuCAGAAGAcuguuGAGGCGCCCCagCAa -3'
miRNA:   3'- aaAAU-GUUUUCU-----UUUCGUGGGGagGU- -5'
4036 3' -45 NC_001650.1 + 10522 0.67 0.999988
Target:  5'- --cUACAccAAAuGAAGAcCACCCCUCUAc -3'
miRNA:   3'- aaaAUGU--UUU-CUUUUcGUGGGGAGGU- -5'
4036 3' -45 NC_001650.1 + 11029 0.75 0.971843
Target:  5'- -cUUACAGgcGGAcgGAGgACCCCUCCGg -3'
miRNA:   3'- aaAAUGUUuuCUU--UUCgUGGGGAGGU- -5'
4036 3' -45 NC_001650.1 + 11177 0.71 0.998582
Target:  5'- cUUUACAGGccccc-GCGCCCCUCCu -3'
miRNA:   3'- aAAAUGUUUucuuuuCGUGGGGAGGu -5'
4036 3' -45 NC_001650.1 + 12314 0.69 0.99982
Target:  5'- --gUACAAGAGAGAAGggacCACCCaUCUAu -3'
miRNA:   3'- aaaAUGUUUUCUUUUC----GUGGGgAGGU- -5'
4036 3' -45 NC_001650.1 + 13420 0.67 0.999977
Target:  5'- uUUUUACAGGGGAu--GCuguuCCCC-CCAc -3'
miRNA:   3'- -AAAAUGUUUUCUuuuCGu---GGGGaGGU- -5'
4036 3' -45 NC_001650.1 + 13900 0.77 0.944169
Target:  5'- -cUUACAGgcuucccccgGAGAGAGGCGCCCC-CCu -3'
miRNA:   3'- aaAAUGUU----------UUCUUUUCGUGGGGaGGu -5'
4036 3' -45 NC_001650.1 + 14615 0.68 0.999941
Target:  5'- -cUUACAGGAGAAGGccccGCAUCCCaCCc -3'
miRNA:   3'- aaAAUGUUUUCUUUU----CGUGGGGaGGu -5'
4036 3' -45 NC_001650.1 + 14937 0.67 0.999977
Target:  5'- ---cGCAGAGcccccgggcGGAAAGCGCCCCUa-- -3'
miRNA:   3'- aaaaUGUUUU---------CUUUUCGUGGGGAggu -5'
4036 3' -45 NC_001650.1 + 17980 0.78 0.902913
Target:  5'- ---gGguGAAGAAGAGCGCCCC-CCAc -3'
miRNA:   3'- aaaaUguUUUCUUUUCGUGGGGaGGU- -5'
4036 3' -45 NC_001650.1 + 26440 0.67 0.999988
Target:  5'- --gUGgAGGAGAAcguGGGCACCCaggCCAg -3'
miRNA:   3'- aaaAUgUUUUCUU---UUCGUGGGga-GGU- -5'
4036 3' -45 NC_001650.1 + 26798 0.68 0.999956
Target:  5'- ---aGCGGGccGGggGAGCcgcgcGCCCCUUCGa -3'
miRNA:   3'- aaaaUGUUU--UCuuUUCG-----UGGGGAGGU- -5'
4036 3' -45 NC_001650.1 + 31493 0.69 0.999701
Target:  5'- cUUUUGCAGAAGAuggucAGcCugCCCUCUc -3'
miRNA:   3'- -AAAAUGUUUUCUuu---UC-GugGGGAGGu -5'
4036 3' -45 NC_001650.1 + 37815 0.71 0.998582
Target:  5'- --aUGCAGAGGAAcgagGAGCuCCCCcagaUCCAc -3'
miRNA:   3'- aaaAUGUUUUCUU----UUCGuGGGG----AGGU- -5'
4036 3' -45 NC_001650.1 + 38059 0.67 0.999976
Target:  5'- ---cGCAGGGGGGAcaggacgggcgugGGCACCCUgUCCGu -3'
miRNA:   3'- aaaaUGUUUUCUUU-------------UCGUGGGG-AGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.