miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4036 5' -54.4 NC_001650.1 + 55638 0.66 0.969098
Target:  5'- cGGCGGGGcgGUggGCCCagUCCGcguuGGCGa -3'
miRNA:   3'- -CCGCCUCuuUA--UGGGagAGGU----CCGUc -5'
4036 5' -54.4 NC_001650.1 + 46484 0.66 0.969098
Target:  5'- cGgGGucAGAAGUucACCCUCUCCccGGCGu -3'
miRNA:   3'- cCgCC--UCUUUA--UGGGAGAGGu-CCGUc -5'
4036 5' -54.4 NC_001650.1 + 74636 0.66 0.969098
Target:  5'- -uCGGAGAcc--CCCUC-CCGGGCGu -3'
miRNA:   3'- ccGCCUCUuuauGGGAGaGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 122698 0.66 0.969098
Target:  5'- aGGCGGuacagGGAGGUGgCCUC-CCuGGCc- -3'
miRNA:   3'- -CCGCC-----UCUUUAUgGGAGaGGuCCGuc -5'
4036 5' -54.4 NC_001650.1 + 102190 0.66 0.969098
Target:  5'- gGGCcccAGAGAcACCCccaggcgcaCUCCAGGCAGu -3'
miRNA:   3'- -CCGcc-UCUUUaUGGGa--------GAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 106012 0.66 0.969098
Target:  5'- uGCaGGAGGAccucAUGCUCUUUCCccAGGCGa -3'
miRNA:   3'- cCG-CCUCUU----UAUGGGAGAGG--UCCGUc -5'
4036 5' -54.4 NC_001650.1 + 75335 0.66 0.968497
Target:  5'- aGGCGGuGAGgcgcgcguccuccAUGCCCUCccaCCcggugaccuggguGGGCAGc -3'
miRNA:   3'- -CCGCCuCUU-------------UAUGGGAGa--GG-------------UCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 175345 0.66 0.96601
Target:  5'- --gGGAGGGcgcGCCgCUC-CCAGGCAGc -3'
miRNA:   3'- ccgCCUCUUua-UGG-GAGaGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 8638 0.66 0.96601
Target:  5'- --gGGAGGGcgcGCCgCUC-CCAGGCAGc -3'
miRNA:   3'- ccgCCUCUUua-UGG-GAGaGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 130092 0.66 0.96601
Target:  5'- gGGgGGAGAGccGCCCgccaagC-CCAaGGCGGa -3'
miRNA:   3'- -CCgCCUCUUuaUGGGa-----GaGGU-CCGUC- -5'
4036 5' -54.4 NC_001650.1 + 98126 0.66 0.965043
Target:  5'- cGGCGGAcugguuccaguacuGGGAgGCCUUCUUgAGGCu- -3'
miRNA:   3'- -CCGCCU--------------CUUUaUGGGAGAGgUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 107683 0.66 0.964056
Target:  5'- cGCGGAGAAGUGCCUgccuguuauucaguuUaggugcgacgcCUCCAGGgccCAGg -3'
miRNA:   3'- cCGCCUCUUUAUGGG---------------A-----------GAGGUCC---GUC- -5'
4036 5' -54.4 NC_001650.1 + 66559 0.66 0.962711
Target:  5'- gGGCGGGGu-GUGCCCcacgC-CCGGGguCAGg -3'
miRNA:   3'- -CCGCCUCuuUAUGGGa---GaGGUCC--GUC- -5'
4036 5' -54.4 NC_001650.1 + 105408 0.66 0.959195
Target:  5'- aGGCaGAuaaguaGAAGUAcCCCUCuUCCAGGUg- -3'
miRNA:   3'- -CCGcCU------CUUUAU-GGGAG-AGGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 75713 0.66 0.958832
Target:  5'- -cUGGGGAGuacCCCUCcaccccgUCCAGGUAGa -3'
miRNA:   3'- ccGCCUCUUuauGGGAG-------AGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 23663 0.66 0.955458
Target:  5'- aGGgGGAGGucuuUACCCUCcugacCCGGuGCAa -3'
miRNA:   3'- -CCgCCUCUuu--AUGGGAGa----GGUC-CGUc -5'
4036 5' -54.4 NC_001650.1 + 50241 0.66 0.955458
Target:  5'- gGGCGGGGAccaugcgcgacaGggGCgCCUCUCUgcgcccgggagcGGGCGGc -3'
miRNA:   3'- -CCGCCUCU------------UuaUG-GGAGAGG------------UCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 129156 0.66 0.953901
Target:  5'- gGGCGGcccucuucGCCCUCUCgGaGGCGGu -3'
miRNA:   3'- -CCGCCucuuua--UGGGAGAGgU-CCGUC- -5'
4036 5' -54.4 NC_001650.1 + 139044 0.67 0.951496
Target:  5'- uGUGGGGG--UACCCggCUCCGGGgGa -3'
miRNA:   3'- cCGCCUCUuuAUGGGa-GAGGUCCgUc -5'
4036 5' -54.4 NC_001650.1 + 148919 0.67 0.951496
Target:  5'- uGGUGGGGugacacuGGaGCCCgUCUCcCGGGCAa -3'
miRNA:   3'- -CCGCCUCu------UUaUGGG-AGAG-GUCCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.