Results 1 - 20 of 103 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 175345 | 0.66 | 0.96601 |
Target: 5'- --gGGAGGGcgcGCCgCUC-CCAGGCAGc -3' miRNA: 3'- ccgCCUCUUua-UGG-GAGaGGUCCGUC- -5' |
|||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 105408 | 0.66 | 0.959195 |
Target: 5'- aGGCaGAuaaguaGAAGUAcCCCUCuUCCAGGUg- -3' miRNA: 3'- -CCGcCU------CUUUAU-GGGAG-AGGUCCGuc -5' |
|||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 122698 | 0.66 | 0.969098 |
Target: 5'- aGGCGGuacagGGAGGUGgCCUC-CCuGGCc- -3' miRNA: 3'- -CCGCC-----UCUUUAUgGGAGaGGuCCGuc -5' |
|||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 102190 | 0.66 | 0.969098 |
Target: 5'- gGGCcccAGAGAcACCCccaggcgcaCUCCAGGCAGu -3' miRNA: 3'- -CCGcc-UCUUUaUGGGa--------GAGGUCCGUC- -5' |
|||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 98126 | 0.66 | 0.965043 |
Target: 5'- cGGCGGAcugguuccaguacuGGGAgGCCUUCUUgAGGCu- -3' miRNA: 3'- -CCGCCU--------------CUUUaUGGGAGAGgUCCGuc -5' |
|||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 50241 | 0.66 | 0.955458 |
Target: 5'- gGGCGGGGAccaugcgcgacaGggGCgCCUCUCUgcgcccgggagcGGGCGGc -3' miRNA: 3'- -CCGCCUCU------------UuaUG-GGAGAGG------------UCCGUC- -5' |
|||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 46484 | 0.66 | 0.969098 |
Target: 5'- cGgGGucAGAAGUucACCCUCUCCccGGCGu -3' miRNA: 3'- cCgCC--UCUUUA--UGGGAGAGGu-CCGUc -5' |
|||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 75713 | 0.66 | 0.958832 |
Target: 5'- -cUGGGGAGuacCCCUCcaccccgUCCAGGUAGa -3' miRNA: 3'- ccGCCUCUUuauGGGAG-------AGGUCCGUC- -5' |
|||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 75335 | 0.66 | 0.968497 |
Target: 5'- aGGCGGuGAGgcgcgcguccuccAUGCCCUCccaCCcggugaccuggguGGGCAGc -3' miRNA: 3'- -CCGCCuCUU-------------UAUGGGAGa--GG-------------UCCGUC- -5' |
|||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 130092 | 0.66 | 0.96601 |
Target: 5'- gGGgGGAGAGccGCCCgccaagC-CCAaGGCGGa -3' miRNA: 3'- -CCgCCUCUUuaUGGGa-----GaGGU-CCGUC- -5' |
|||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 23663 | 0.66 | 0.955458 |
Target: 5'- aGGgGGAGGucuuUACCCUCcugacCCGGuGCAa -3' miRNA: 3'- -CCgCCUCUuu--AUGGGAGa----GGUC-CGUc -5' |
|||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 74636 | 0.66 | 0.969098 |
Target: 5'- -uCGGAGAcc--CCCUC-CCGGGCGu -3' miRNA: 3'- ccGCCUCUuuauGGGAGaGGUCCGUc -5' |
|||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 55638 | 0.66 | 0.969098 |
Target: 5'- cGGCGGGGcgGUggGCCCagUCCGcguuGGCGa -3' miRNA: 3'- -CCGCCUCuuUA--UGGGagAGGU----CCGUc -5' |
|||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 8638 | 0.66 | 0.96601 |
Target: 5'- --gGGAGGGcgcGCCgCUC-CCAGGCAGc -3' miRNA: 3'- ccgCCUCUUua-UGG-GAGaGGUCCGUC- -5' |
|||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 106012 | 0.66 | 0.969098 |
Target: 5'- uGCaGGAGGAccucAUGCUCUUUCCccAGGCGa -3' miRNA: 3'- cCG-CCUCUU----UAUGGGAGAGG--UCCGUc -5' |
|||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 107683 | 0.66 | 0.964056 |
Target: 5'- cGCGGAGAAGUGCCUgccuguuauucaguuUaggugcgacgcCUCCAGGgccCAGg -3' miRNA: 3'- cCGCCUCUUUAUGGG---------------A-----------GAGGUCC---GUC- -5' |
|||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 129156 | 0.66 | 0.953901 |
Target: 5'- gGGCGGcccucuucGCCCUCUCgGaGGCGGu -3' miRNA: 3'- -CCGCCucuuua--UGGGAGAGgU-CCGUC- -5' |
|||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 66559 | 0.66 | 0.962711 |
Target: 5'- gGGCGGGGu-GUGCCCcacgC-CCGGGguCAGg -3' miRNA: 3'- -CCGCCUCuuUAUGGGa---GaGGUCC--GUC- -5' |
|||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 148919 | 0.67 | 0.951496 |
Target: 5'- uGGUGGGGugacacuGGaGCCCgUCUCcCGGGCAa -3' miRNA: 3'- -CCGCCUCu------UUaUGGG-AGAG-GUCCGUc -5' |
|||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 71992 | 0.67 | 0.951496 |
Target: 5'- gGGCGGGGcg--GCCgUCUCCAaGG-AGg -3' miRNA: 3'- -CCGCCUCuuuaUGGgAGAGGU-CCgUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home