Results 61 - 80 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 101318 | 0.69 | 0.891747 |
Target: 5'- cGuaGGAGggGUAcagggcuauauccCCCagCUCCAGGCAc -3' miRNA: 3'- -CcgCCUCuuUAU-------------GGGa-GAGGUCCGUc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 133645 | 0.69 | 0.892414 |
Target: 5'- cGGUGGGGGcg-GCCCUgaCCGGGUu- -3' miRNA: 3'- -CCGCCUCUuuaUGGGAgaGGUCCGuc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 85589 | 0.69 | 0.863993 |
Target: 5'- cGGUGGAGuacGUGCCC---CCGGGCAa -3' miRNA: 3'- -CCGCCUCuu-UAUGGGagaGGUCCGUc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 21683 | 0.69 | 0.871424 |
Target: 5'- cGCGGGGggGcccugcACCCUgUCCAGGgAc -3' miRNA: 3'- cCGCCUCuuUa-----UGGGAgAGGUCCgUc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 111195 | 0.69 | 0.892414 |
Target: 5'- aGGCGGcucAGGcg-GCCCgcgCccCCAGGCAGg -3' miRNA: 3'- -CCGCC---UCUuuaUGGGa--Ga-GGUCCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 171748 | 0.69 | 0.885639 |
Target: 5'- aGGCGGAcgGggGU-CCCUC-CgGGGguGg -3' miRNA: 3'- -CCGCCU--CuuUAuGGGAGaGgUCCguC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 57813 | 0.69 | 0.885639 |
Target: 5'- cGGCGGGGGcgcgaaggGCaucgCUCCGGGCGGu -3' miRNA: 3'- -CCGCCUCUuua-----UGgga-GAGGUCCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 5041 | 0.69 | 0.885639 |
Target: 5'- aGGCGGAcgGggGU-CCCUC-CgGGGguGg -3' miRNA: 3'- -CCGCCU--CuuUAuGGGAGaGgUCCguC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 91054 | 0.69 | 0.878641 |
Target: 5'- gGGCGGuGggGUACUC-CUUCuuGGGCAc -3' miRNA: 3'- -CCGCCuCuuUAUGGGaGAGG--UCCGUc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 57937 | 0.69 | 0.878641 |
Target: 5'- cGGcCGGGGGcggcACCCUCagCUGGGCGGg -3' miRNA: 3'- -CC-GCCUCUuua-UGGGAGa-GGUCCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 108512 | 0.69 | 0.871424 |
Target: 5'- gGGUGGAGggGUACUC-C-CCagAGGCAa -3' miRNA: 3'- -CCGCCUCuuUAUGGGaGaGG--UCCGUc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 89161 | 0.69 | 0.871424 |
Target: 5'- uGGCGGAcagGGuccuGUGCCCggggCUCCGGgGCGa -3' miRNA: 3'- -CCGCCU---CUu---UAUGGGa---GAGGUC-CGUc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 47947 | 0.7 | 0.841287 |
Target: 5'- gGGgGGAGGGuugcccgagacaggcUGCCCUCUCuCAGGgAGu -3' miRNA: 3'- -CCgCCUCUUu--------------AUGGGAGAG-GUCCgUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 108920 | 0.7 | 0.856353 |
Target: 5'- cGCGGAGcug-GCCUUCUCCcuGGGCc- -3' miRNA: 3'- cCGCCUCuuuaUGGGAGAGG--UCCGuc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 131108 | 0.7 | 0.848512 |
Target: 5'- aGGCGaGGGGAGU-CCCUC-CgGGGCGc -3' miRNA: 3'- -CCGC-CUCUUUAuGGGAGaGgUCCGUc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 84434 | 0.7 | 0.840475 |
Target: 5'- gGGCGGAGuuugacucagaGAGgcuauCCCUCUCggagAGGCAGg -3' miRNA: 3'- -CCGCCUC-----------UUUau---GGGAGAGg---UCCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 50848 | 0.7 | 0.840475 |
Target: 5'- gGGCGGcGAGcUGCCCUUUCUgcuGGcGCAGc -3' miRNA: 3'- -CCGCCuCUUuAUGGGAGAGG---UC-CGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 13819 | 0.7 | 0.81526 |
Target: 5'- cGGCGGGGAccauGUGCCC-CUuaagggCCAauGGCAGa -3' miRNA: 3'- -CCGCCUCUu---UAUGGGaGA------GGU--CCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 52786 | 0.7 | 0.832248 |
Target: 5'- cGGCGGcGGcg-GCCCUCggggcCCGGGCGc -3' miRNA: 3'- -CCGCCuCUuuaUGGGAGa----GGUCCGUc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 180526 | 0.7 | 0.81526 |
Target: 5'- cGGCGGGGAccauGUGCCC-CUuaagggCCAauGGCAGa -3' miRNA: 3'- -CCGCCUCUu---UAUGGGaGA------GGU--CCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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