miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4036 5' -54.4 NC_001650.1 + 162663 1.03 0.012998
Target:  5'- uGGCGGAGAAAU-CCCUCUCCAGGCAGg -3'
miRNA:   3'- -CCGCCUCUUUAuGGGAGAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 11034 0.81 0.299902
Target:  5'- aGGCGGAcGGAggACCC-CUCCGGGCAc -3'
miRNA:   3'- -CCGCCU-CUUuaUGGGaGAGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 177741 0.81 0.299902
Target:  5'- aGGCGGAcGGAggACCC-CUCCGGGCAc -3'
miRNA:   3'- -CCGCCU-CUUuaUGGGaGAGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 28017 0.81 0.299902
Target:  5'- cGCGGAGAug-GCCCUggCCGGGCAGu -3'
miRNA:   3'- cCGCCUCUuuaUGGGAgaGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 28410 0.81 0.273158
Target:  5'- gGGCGGGGAGcugACCCUCUacaggucccCCGGGCGGc -3'
miRNA:   3'- -CCGCCUCUUua-UGGGAGA---------GGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 26933 0.8 0.314016
Target:  5'- gGGCGGGGAGGUGCCC---CCAGGCGc -3'
miRNA:   3'- -CCGCCUCUUUAUGGGagaGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 183555 0.79 0.351471
Target:  5'- uGGgGGAguGAGGUcACCCgUCUCCGGGCAGa -3'
miRNA:   3'- -CCgCCU--CUUUA-UGGG-AGAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 16848 0.79 0.351471
Target:  5'- uGGgGGAguGAGGUcACCCgUCUCCGGGCAGa -3'
miRNA:   3'- -CCgCCU--CUUUA-UGGG-AGAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 25409 0.78 0.426517
Target:  5'- gGGCGGGGGAccugACCCUCcUCagGGGCAGg -3'
miRNA:   3'- -CCGCCUCUUua--UGGGAG-AGg-UCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 126039 0.75 0.559694
Target:  5'- gGGCGGcGAAG-ACCCUC-CCAcGGCAGc -3'
miRNA:   3'- -CCGCCuCUUUaUGGGAGaGGU-CCGUC- -5'
4036 5' -54.4 NC_001650.1 + 74231 0.74 0.630765
Target:  5'- cGCGGAcGAGAUAUCCaagCUCCAGGagaGGg -3'
miRNA:   3'- cCGCCU-CUUUAUGGGa--GAGGUCCg--UC- -5'
4036 5' -54.4 NC_001650.1 + 88317 0.74 0.640982
Target:  5'- cGGCGGGGAGGUGuuCgugUUCgAGGCGGa -3'
miRNA:   3'- -CCGCCUCUUUAUggGa--GAGgUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 34454 0.73 0.701844
Target:  5'- gGGUGGAGAGGgcgGCCCaggagCCGGGCGc -3'
miRNA:   3'- -CCGCCUCUUUa--UGGGaga--GGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 132171 0.73 0.681697
Target:  5'- gGGCGGAGAAgGUGCCCgugaCCGGGUu- -3'
miRNA:   3'- -CCGCCUCUU-UAUGGGaga-GGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 125113 0.73 0.681697
Target:  5'- aGGCGGucAGcgGCCCgaacagCCAGGCAGa -3'
miRNA:   3'- -CCGCCucUUuaUGGGaga---GGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 63609 0.73 0.691795
Target:  5'- uGGCGGGGGcgggGGUGCCCUC---GGGCGGc -3'
miRNA:   3'- -CCGCCUCU----UUAUGGGAGaggUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 26739 0.73 0.661386
Target:  5'- cGGCcuGGAGGGgcuGUGCgCCgcCUCCAGGCAGc -3'
miRNA:   3'- -CCG--CCUCUU---UAUG-GGa-GAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 70691 0.72 0.741364
Target:  5'- gGGCGGGauGggGUACCC-CUCCcguaAGGCu- -3'
miRNA:   3'- -CCGCCU--CuuUAUGGGaGAGG----UCCGuc -5'
4036 5' -54.4 NC_001650.1 + 29024 0.72 0.76059
Target:  5'- cGGCcGAGGAGUACCCgcacgccCUCgGGGCGc -3'
miRNA:   3'- -CCGcCUCUUUAUGGGa------GAGgUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 123522 0.71 0.770037
Target:  5'- -aCGGAGggGUGCCC-CUCaAGGaCAGg -3'
miRNA:   3'- ccGCCUCuuUAUGGGaGAGgUCC-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.