miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4036 5' -54.4 NC_001650.1 + 57937 0.69 0.878641
Target:  5'- cGGcCGGGGGcggcACCCUCagCUGGGCGGg -3'
miRNA:   3'- -CC-GCCUCUuua-UGGGAGa-GGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 136093 0.69 0.863993
Target:  5'- aGGCGGGGGcg-GCCUUgUCCAGccccagggucaGCAGg -3'
miRNA:   3'- -CCGCCUCUuuaUGGGAgAGGUC-----------CGUC- -5'
4036 5' -54.4 NC_001650.1 + 108512 0.69 0.871424
Target:  5'- gGGUGGAGggGUACUC-C-CCagAGGCAa -3'
miRNA:   3'- -CCGCCUCuuUAUGGGaGaGG--UCCGUc -5'
4036 5' -54.4 NC_001650.1 + 89161 0.69 0.871424
Target:  5'- uGGCGGAcagGGuccuGUGCCCggggCUCCGGgGCGa -3'
miRNA:   3'- -CCGCCU---CUu---UAUGGGa---GAGGUC-CGUc -5'
4036 5' -54.4 NC_001650.1 + 161368 0.69 0.874336
Target:  5'- cGGgGGAGAAGUGgcucagcucagagacCgCCUCcUCGGGCAGg -3'
miRNA:   3'- -CCgCCUCUUUAU---------------G-GGAGaGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 21683 0.69 0.871424
Target:  5'- cGCGGGGggGcccugcACCCUgUCCAGGgAc -3'
miRNA:   3'- cCGCCUCuuUa-----UGGGAgAGGUCCgUc -5'
4036 5' -54.4 NC_001650.1 + 85589 0.69 0.863993
Target:  5'- cGGUGGAGuacGUGCCC---CCGGGCAa -3'
miRNA:   3'- -CCGCCUCuu-UAUGGGagaGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 122666 0.68 0.928191
Target:  5'- aGGCGGucaAGGAG-ACCCUC-CUGGGCu- -3'
miRNA:   3'- -CCGCC---UCUUUaUGGGAGaGGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 145753 0.68 0.911362
Target:  5'- uGGCGGGcAGGUccGCCgggUUCCAGGCGGu -3'
miRNA:   3'- -CCGCCUcUUUA--UGGga-GAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 151353 0.68 0.928191
Target:  5'- uGGUGGAGGAGgaucuuUAUUgUCUUCAGGCu- -3'
miRNA:   3'- -CCGCCUCUUU------AUGGgAGAGGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 88477 0.68 0.898962
Target:  5'- aGGCaGGAGuu---CUC-CUCCGGGCGGg -3'
miRNA:   3'- -CCG-CCUCuuuauGGGaGAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 6606 0.68 0.922269
Target:  5'- uGGUGGAGGgugguGGUGgUCUCugagguuUCCAGGUAGa -3'
miRNA:   3'- -CCGCCUCU-----UUAUgGGAG-------AGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 136630 0.68 0.928191
Target:  5'- gGGCGucGggGcGCCCUgaggCUCCgcGGGCAGa -3'
miRNA:   3'- -CCGCcuCuuUaUGGGA----GAGG--UCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 43303 0.68 0.928191
Target:  5'- aGGUGGuuGAAAauCCCUCUCUAuuGGCAc -3'
miRNA:   3'- -CCGCCu-CUUUauGGGAGAGGU--CCGUc -5'
4036 5' -54.4 NC_001650.1 + 87022 0.68 0.922819
Target:  5'- --gGGAGAAG-ACCagcaUCUCCAGGCc- -3'
miRNA:   3'- ccgCCUCUUUaUGGg---AGAGGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 86591 0.68 0.911362
Target:  5'- cGuCGGAGGA--GCCCUCcUCCAGGa-- -3'
miRNA:   3'- cC-GCCUCUUuaUGGGAG-AGGUCCguc -5'
4036 5' -54.4 NC_001650.1 + 157481 0.68 0.898962
Target:  5'- aGGCGGcgcacaGCCC-CUCCAGGcCGGg -3'
miRNA:   3'- -CCGCCucuuuaUGGGaGAGGUCC-GUC- -5'
4036 5' -54.4 NC_001650.1 + 113818 0.68 0.905278
Target:  5'- gGGCcgucuccugGGAGGAGUGCaguaUCUCCAGGUc- -3'
miRNA:   3'- -CCG---------CCUCUUUAUGgg--AGAGGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 50556 0.68 0.905278
Target:  5'- uGGCGGuGGAGUGCCCgcgCaacCCGGuCAGg -3'
miRNA:   3'- -CCGCCuCUUUAUGGGa--Ga--GGUCcGUC- -5'
4036 5' -54.4 NC_001650.1 + 82642 0.68 0.911362
Target:  5'- uGGCGGAGaAGAUACCCgCgugCgGGGUc- -3'
miRNA:   3'- -CCGCCUC-UUUAUGGGaGa--GgUCCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.