miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4036 5' -54.4 NC_001650.1 + 117069 0.71 0.779363
Target:  5'- gGGCGGGGAGAUcACCgUCUaCCGGuGCc- -3'
miRNA:   3'- -CCGCCUCUUUA-UGGgAGA-GGUC-CGuc -5'
4036 5' -54.4 NC_001650.1 + 94488 0.71 0.788556
Target:  5'- aGGCGG-GggGUGgUCUC-CCAGGCu- -3'
miRNA:   3'- -CCGCCuCuuUAUgGGAGaGGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 26517 0.71 0.788556
Target:  5'- cGUGGAGGAGgcguCCCUC-CUGGGCAa -3'
miRNA:   3'- cCGCCUCUUUau--GGGAGaGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 180526 0.7 0.81526
Target:  5'- cGGCGGGGAccauGUGCCC-CUuaagggCCAauGGCAGa -3'
miRNA:   3'- -CCGCCUCUu---UAUGGGaGA------GGU--CCGUC- -5'
4036 5' -54.4 NC_001650.1 + 13819 0.7 0.81526
Target:  5'- cGGCGGGGAccauGUGCCC-CUuaagggCCAauGGCAGa -3'
miRNA:   3'- -CCGCCUCUu---UAUGGGaGA------GGU--CCGUC- -5'
4036 5' -54.4 NC_001650.1 + 52786 0.7 0.832248
Target:  5'- cGGCGGcGGcg-GCCCUCggggcCCGGGCGc -3'
miRNA:   3'- -CCGCCuCUuuaUGGGAGa----GGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 50848 0.7 0.840475
Target:  5'- gGGCGGcGAGcUGCCCUUUCUgcuGGcGCAGc -3'
miRNA:   3'- -CCGCCuCUUuAUGGGAGAGG---UC-CGUC- -5'
4036 5' -54.4 NC_001650.1 + 84434 0.7 0.840475
Target:  5'- gGGCGGAGuuugacucagaGAGgcuauCCCUCUCggagAGGCAGg -3'
miRNA:   3'- -CCGCCUC-----------UUUau---GGGAGAGg---UCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 47947 0.7 0.841287
Target:  5'- gGGgGGAGGGuugcccgagacaggcUGCCCUCUCuCAGGgAGu -3'
miRNA:   3'- -CCgCCUCUUu--------------AUGGGAGAG-GUCCgUC- -5'
4036 5' -54.4 NC_001650.1 + 131108 0.7 0.848512
Target:  5'- aGGCGaGGGGAGU-CCCUC-CgGGGCGc -3'
miRNA:   3'- -CCGC-CUCUUUAuGGGAGaGgUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 108920 0.7 0.856353
Target:  5'- cGCGGAGcug-GCCUUCUCCcuGGGCc- -3'
miRNA:   3'- cCGCCUCuuuaUGGGAGAGG--UCCGuc -5'
4036 5' -54.4 NC_001650.1 + 136093 0.69 0.863993
Target:  5'- aGGCGGGGGcg-GCCUUgUCCAGccccagggucaGCAGg -3'
miRNA:   3'- -CCGCCUCUuuaUGGGAgAGGUC-----------CGUC- -5'
4036 5' -54.4 NC_001650.1 + 85589 0.69 0.863993
Target:  5'- cGGUGGAGuacGUGCCC---CCGGGCAa -3'
miRNA:   3'- -CCGCCUCuu-UAUGGGagaGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 21683 0.69 0.871424
Target:  5'- cGCGGGGggGcccugcACCCUgUCCAGGgAc -3'
miRNA:   3'- cCGCCUCuuUa-----UGGGAgAGGUCCgUc -5'
4036 5' -54.4 NC_001650.1 + 108512 0.69 0.871424
Target:  5'- gGGUGGAGggGUACUC-C-CCagAGGCAa -3'
miRNA:   3'- -CCGCCUCuuUAUGGGaGaGG--UCCGUc -5'
4036 5' -54.4 NC_001650.1 + 89161 0.69 0.871424
Target:  5'- uGGCGGAcagGGuccuGUGCCCggggCUCCGGgGCGa -3'
miRNA:   3'- -CCGCCU---CUu---UAUGGGa---GAGGUC-CGUc -5'
4036 5' -54.4 NC_001650.1 + 161368 0.69 0.874336
Target:  5'- cGGgGGAGAAGUGgcucagcucagagacCgCCUCcUCGGGCAGg -3'
miRNA:   3'- -CCgCCUCUUUAU---------------G-GGAGaGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 62910 0.69 0.877215
Target:  5'- aGGCGGcgcgcacGCCCUCUaucUCGGGCGGg -3'
miRNA:   3'- -CCGCCucuuua-UGGGAGA---GGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 57937 0.69 0.878641
Target:  5'- cGGcCGGGGGcggcACCCUCagCUGGGCGGg -3'
miRNA:   3'- -CC-GCCUCUuua-UGGGAGa-GGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 91054 0.69 0.878641
Target:  5'- gGGCGGuGggGUACUC-CUUCuuGGGCAc -3'
miRNA:   3'- -CCGCCuCuuUAUGGGaGAGG--UCCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.