Results 61 - 80 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 151353 | 0.68 | 0.928191 |
Target: 5'- uGGUGGAGGAGgaucuuUAUUgUCUUCAGGCu- -3' miRNA: 3'- -CCGCCUCUUU------AUGGgAGAGGUCCGuc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 136630 | 0.68 | 0.928191 |
Target: 5'- gGGCGucGggGcGCCCUgaggCUCCgcGGGCAGa -3' miRNA: 3'- -CCGCcuCuuUaUGGGA----GAGG--UCCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 122666 | 0.68 | 0.928191 |
Target: 5'- aGGCGGucaAGGAG-ACCCUC-CUGGGCu- -3' miRNA: 3'- -CCGCC---UCUUUaUGGGAGaGGUCCGuc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 67523 | 0.67 | 0.933325 |
Target: 5'- aGGgGGAGGcgacgGAUGCCC-CgagCGGGCGGg -3' miRNA: 3'- -CCgCCUCU-----UUAUGGGaGag-GUCCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 130295 | 0.67 | 0.933325 |
Target: 5'- cGCGGGGGGAgGCCaacgCCAGGCuGg -3' miRNA: 3'- cCGCCUCUUUaUGGgagaGGUCCGuC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 68200 | 0.67 | 0.933325 |
Target: 5'- aGUGGAuAGggGCCCUCUUUAGGgAGg -3' miRNA: 3'- cCGCCUcUUuaUGGGAGAGGUCCgUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 48166 | 0.67 | 0.933325 |
Target: 5'- gGGCuGGGGGAGUACUCUCUgCCccucGuGCGGu -3' miRNA: 3'- -CCG-CCUCUUUAUGGGAGA-GGu---C-CGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 4076 | 0.67 | 0.938221 |
Target: 5'- -aUGGAGAG--GCCCUg-CCAGGCAu -3' miRNA: 3'- ccGCCUCUUuaUGGGAgaGGUCCGUc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 67428 | 0.67 | 0.938221 |
Target: 5'- uGGCGauGAGGA--GCCCcggUCUCCAGaGCAu -3' miRNA: 3'- -CCGC--CUCUUuaUGGG---AGAGGUC-CGUc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 101941 | 0.67 | 0.938221 |
Target: 5'- aGCGGGGGGcu-CCCUCcUCCGGGa-- -3' miRNA: 3'- cCGCCUCUUuauGGGAG-AGGUCCguc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 170783 | 0.67 | 0.938221 |
Target: 5'- -aUGGAGAG--GCCCUg-CCAGGCAu -3' miRNA: 3'- ccGCCUCUUuaUGGGAgaGGUCCGUc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 132610 | 0.67 | 0.938221 |
Target: 5'- cGCGGAGGcgcugGCCCccaacCUgCAGGCGGc -3' miRNA: 3'- cCGCCUCUuua--UGGGa----GAgGUCCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 131187 | 0.67 | 0.941507 |
Target: 5'- uGgGGAGAAAUACCCcgaaucgguuaaUUUCCcuucccggggcgcgAGGCAGc -3' miRNA: 3'- cCgCCUCUUUAUGGG------------AGAGG--------------UCCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 156913 | 0.67 | 0.94288 |
Target: 5'- --aGGAGAGccGUGCCCUCUUgcGGCAc -3' miRNA: 3'- ccgCCUCUU--UAUGGGAGAGguCCGUc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 117175 | 0.67 | 0.94288 |
Target: 5'- aGGgGGAGA----CCCUCUCCAGa--- -3' miRNA: 3'- -CCgCCUCUuuauGGGAGAGGUCcguc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 15068 | 0.67 | 0.94288 |
Target: 5'- uGGgGGGGAAGggacgGCCCcgcccgcuuccUCUuuacagacCCGGGCAGg -3' miRNA: 3'- -CCgCCUCUUUa----UGGG-----------AGA--------GGUCCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 181775 | 0.67 | 0.94288 |
Target: 5'- uGGgGGGGAAGggacgGCCCcgcccgcuuccUCUuuacagacCCGGGCAGg -3' miRNA: 3'- -CCgCCUCUUUa----UGGG-----------AGA--------GGUCCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 103081 | 0.67 | 0.947304 |
Target: 5'- cGCGGAGAucauaAAUACCaUCUaCAGGUGGu -3' miRNA: 3'- cCGCCUCU-----UUAUGGgAGAgGUCCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 120757 | 0.67 | 0.947304 |
Target: 5'- gGGCauagaGGAGAuc-ACCUUCUCCuucuGGCAc -3' miRNA: 3'- -CCG-----CCUCUuuaUGGGAGAGGu---CCGUc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 71992 | 0.67 | 0.951496 |
Target: 5'- gGGCGGGGcg--GCCgUCUCCAaGG-AGg -3' miRNA: 3'- -CCGCCUCuuuaUGGgAGAGGU-CCgUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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