miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4036 5' -54.4 NC_001650.1 + 159779 0.67 0.951496
Target:  5'- aGGCGaGGAAGgccuCCCUCUCCcgcucguaGGGCc- -3'
miRNA:   3'- -CCGCcUCUUUau--GGGAGAGG--------UCCGuc -5'
4036 5' -54.4 NC_001650.1 + 96200 0.67 0.951496
Target:  5'- cGGCGaGAGA---GCCa--UCCGGGCAa -3'
miRNA:   3'- -CCGC-CUCUuuaUGGgagAGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 71992 0.67 0.951496
Target:  5'- gGGCGGGGcg--GCCgUCUCCAaGG-AGg -3'
miRNA:   3'- -CCGCCUCuuuaUGGgAGAGGU-CCgUC- -5'
4036 5' -54.4 NC_001650.1 + 148919 0.67 0.951496
Target:  5'- uGGUGGGGugacacuGGaGCCCgUCUCcCGGGCAa -3'
miRNA:   3'- -CCGCCUCu------UUaUGGG-AGAG-GUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 120757 0.67 0.947304
Target:  5'- gGGCauagaGGAGAuc-ACCUUCUCCuucuGGCAc -3'
miRNA:   3'- -CCG-----CCUCUuuaUGGGAGAGGu---CCGUc -5'
4036 5' -54.4 NC_001650.1 + 103081 0.67 0.947304
Target:  5'- cGCGGAGAucauaAAUACCaUCUaCAGGUGGu -3'
miRNA:   3'- cCGCCUCU-----UUAUGGgAGAgGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 15068 0.67 0.94288
Target:  5'- uGGgGGGGAAGggacgGCCCcgcccgcuuccUCUuuacagacCCGGGCAGg -3'
miRNA:   3'- -CCgCCUCUUUa----UGGG-----------AGA--------GGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 156913 0.67 0.94288
Target:  5'- --aGGAGAGccGUGCCCUCUUgcGGCAc -3'
miRNA:   3'- ccgCCUCUU--UAUGGGAGAGguCCGUc -5'
4036 5' -54.4 NC_001650.1 + 181775 0.67 0.94288
Target:  5'- uGGgGGGGAAGggacgGCCCcgcccgcuuccUCUuuacagacCCGGGCAGg -3'
miRNA:   3'- -CCgCCUCUUUa----UGGG-----------AGA--------GGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 117175 0.67 0.94288
Target:  5'- aGGgGGAGA----CCCUCUCCAGa--- -3'
miRNA:   3'- -CCgCCUCUuuauGGGAGAGGUCcguc -5'
4036 5' -54.4 NC_001650.1 + 131187 0.67 0.941507
Target:  5'- uGgGGAGAAAUACCCcgaaucgguuaaUUUCCcuucccggggcgcgAGGCAGc -3'
miRNA:   3'- cCgCCUCUUUAUGGG------------AGAGG--------------UCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 4076 0.67 0.938221
Target:  5'- -aUGGAGAG--GCCCUg-CCAGGCAu -3'
miRNA:   3'- ccGCCUCUUuaUGGGAgaGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 67428 0.67 0.938221
Target:  5'- uGGCGauGAGGA--GCCCcggUCUCCAGaGCAu -3'
miRNA:   3'- -CCGC--CUCUUuaUGGG---AGAGGUC-CGUc -5'
4036 5' -54.4 NC_001650.1 + 132610 0.67 0.938221
Target:  5'- cGCGGAGGcgcugGCCCccaacCUgCAGGCGGc -3'
miRNA:   3'- cCGCCUCUuua--UGGGa----GAgGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 101941 0.67 0.938221
Target:  5'- aGCGGGGGGcu-CCCUCcUCCGGGa-- -3'
miRNA:   3'- cCGCCUCUUuauGGGAG-AGGUCCguc -5'
4036 5' -54.4 NC_001650.1 + 170783 0.67 0.938221
Target:  5'- -aUGGAGAG--GCCCUg-CCAGGCAu -3'
miRNA:   3'- ccGCCUCUUuaUGGGAgaGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 48166 0.67 0.933325
Target:  5'- gGGCuGGGGGAGUACUCUCUgCCccucGuGCGGu -3'
miRNA:   3'- -CCG-CCUCUUUAUGGGAGA-GGu---C-CGUC- -5'
4036 5' -54.4 NC_001650.1 + 67523 0.67 0.933325
Target:  5'- aGGgGGAGGcgacgGAUGCCC-CgagCGGGCGGg -3'
miRNA:   3'- -CCgCCUCU-----UUAUGGGaGag-GUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 130295 0.67 0.933325
Target:  5'- cGCGGGGGGAgGCCaacgCCAGGCuGg -3'
miRNA:   3'- cCGCCUCUUUaUGGgagaGGUCCGuC- -5'
4036 5' -54.4 NC_001650.1 + 68200 0.67 0.933325
Target:  5'- aGUGGAuAGggGCCCUCUUUAGGgAGg -3'
miRNA:   3'- cCGCCUcUUuaUGGGAGAGGUCCgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.