Results 41 - 60 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 122666 | 0.68 | 0.928191 |
Target: 5'- aGGCGGucaAGGAG-ACCCUC-CUGGGCu- -3' miRNA: 3'- -CCGCC---UCUUUaUGGGAGaGGUCCGuc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 43303 | 0.68 | 0.928191 |
Target: 5'- aGGUGGuuGAAAauCCCUCUCUAuuGGCAc -3' miRNA: 3'- -CCGCCu-CUUUauGGGAGAGGU--CCGUc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 136630 | 0.68 | 0.928191 |
Target: 5'- gGGCGucGggGcGCCCUgaggCUCCgcGGGCAGa -3' miRNA: 3'- -CCGCcuCuuUaUGGGA----GAGG--UCCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 151353 | 0.68 | 0.928191 |
Target: 5'- uGGUGGAGGAGgaucuuUAUUgUCUUCAGGCu- -3' miRNA: 3'- -CCGCCUCUUU------AUGGgAGAGGUCCGuc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 115240 | 0.68 | 0.922819 |
Target: 5'- uGGCGGucuacaAGAAggACCC-CggagccaggCCGGGCAGg -3' miRNA: 3'- -CCGCC------UCUUuaUGGGaGa--------GGUCCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 124121 | 0.68 | 0.922819 |
Target: 5'- cGGCGGGucGGgccagACCCUCggCGGGCAc -3' miRNA: 3'- -CCGCCUcuUUa----UGGGAGagGUCCGUc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 87022 | 0.68 | 0.922819 |
Target: 5'- --gGGAGAAG-ACCagcaUCUCCAGGCc- -3' miRNA: 3'- ccgCCUCUUUaUGGg---AGAGGUCCGuc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 173313 | 0.68 | 0.922269 |
Target: 5'- uGGUGGAGGgugguGGUGgUCUCugagguuUCCAGGUAGa -3' miRNA: 3'- -CCGCCUCU-----UUAUgGGAG-------AGGUCCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 6606 | 0.68 | 0.922269 |
Target: 5'- uGGUGGAGGgugguGGUGgUCUCugagguuUCCAGGUAGa -3' miRNA: 3'- -CCGCCUCU-----UUAUgGGAG-------AGGUCCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 82642 | 0.68 | 0.911362 |
Target: 5'- uGGCGGAGaAGAUACCCgCgugCgGGGUc- -3' miRNA: 3'- -CCGCCUC-UUUAUGGGaGa--GgUCCGuc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 86591 | 0.68 | 0.911362 |
Target: 5'- cGuCGGAGGA--GCCCUCcUCCAGGa-- -3' miRNA: 3'- cC-GCCUCUUuaUGGGAG-AGGUCCguc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 145753 | 0.68 | 0.911362 |
Target: 5'- uGGCGGGcAGGUccGCCgggUUCCAGGCGGu -3' miRNA: 3'- -CCGCCUcUUUA--UGGga-GAGGUCCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 113818 | 0.68 | 0.905278 |
Target: 5'- gGGCcgucuccugGGAGGAGUGCaguaUCUCCAGGUc- -3' miRNA: 3'- -CCG---------CCUCUUUAUGgg--AGAGGUCCGuc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 50556 | 0.68 | 0.905278 |
Target: 5'- uGGCGGuGGAGUGCCCgcgCaacCCGGuCAGg -3' miRNA: 3'- -CCGCCuCUUUAUGGGa--Ga--GGUCcGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 157481 | 0.68 | 0.898962 |
Target: 5'- aGGCGGcgcacaGCCC-CUCCAGGcCGGg -3' miRNA: 3'- -CCGCCucuuuaUGGGaGAGGUCC-GUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 88477 | 0.68 | 0.898962 |
Target: 5'- aGGCaGGAGuu---CUC-CUCCGGGCGGg -3' miRNA: 3'- -CCG-CCUCuuuauGGGaGAGGUCCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 111195 | 0.69 | 0.892414 |
Target: 5'- aGGCGGcucAGGcg-GCCCgcgCccCCAGGCAGg -3' miRNA: 3'- -CCGCC---UCUuuaUGGGa--Ga-GGUCCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 133645 | 0.69 | 0.892414 |
Target: 5'- cGGUGGGGGcg-GCCCUgaCCGGGUu- -3' miRNA: 3'- -CCGCCUCUuuaUGGGAgaGGUCCGuc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 101318 | 0.69 | 0.891747 |
Target: 5'- cGuaGGAGggGUAcagggcuauauccCCCagCUCCAGGCAc -3' miRNA: 3'- -CcgCCUCuuUAU-------------GGGa-GAGGUCCGUc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 171748 | 0.69 | 0.885639 |
Target: 5'- aGGCGGAcgGggGU-CCCUC-CgGGGguGg -3' miRNA: 3'- -CCGCCU--CuuUAuGGGAGaGgUCCguC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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