miRNA display CGI


Results 21 - 40 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4036 5' -54.4 NC_001650.1 + 46484 0.66 0.969098
Target:  5'- cGgGGucAGAAGUucACCCUCUCCccGGCGu -3'
miRNA:   3'- cCgCC--UCUUUA--UGGGAGAGGu-CCGUc -5'
4036 5' -54.4 NC_001650.1 + 47947 0.7 0.841287
Target:  5'- gGGgGGAGGGuugcccgagacaggcUGCCCUCUCuCAGGgAGu -3'
miRNA:   3'- -CCgCCUCUUu--------------AUGGGAGAG-GUCCgUC- -5'
4036 5' -54.4 NC_001650.1 + 48166 0.67 0.933325
Target:  5'- gGGCuGGGGGAGUACUCUCUgCCccucGuGCGGu -3'
miRNA:   3'- -CCG-CCUCUUUAUGGGAGA-GGu---C-CGUC- -5'
4036 5' -54.4 NC_001650.1 + 50241 0.66 0.955458
Target:  5'- gGGCGGGGAccaugcgcgacaGggGCgCCUCUCUgcgcccgggagcGGGCGGc -3'
miRNA:   3'- -CCGCCUCU------------UuaUG-GGAGAGG------------UCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 50556 0.68 0.905278
Target:  5'- uGGCGGuGGAGUGCCCgcgCaacCCGGuCAGg -3'
miRNA:   3'- -CCGCCuCUUUAUGGGa--Ga--GGUCcGUC- -5'
4036 5' -54.4 NC_001650.1 + 50848 0.7 0.840475
Target:  5'- gGGCGGcGAGcUGCCCUUUCUgcuGGcGCAGc -3'
miRNA:   3'- -CCGCCuCUUuAUGGGAGAGG---UC-CGUC- -5'
4036 5' -54.4 NC_001650.1 + 52786 0.7 0.832248
Target:  5'- cGGCGGcGGcg-GCCCUCggggcCCGGGCGc -3'
miRNA:   3'- -CCGCCuCUuuaUGGGAGa----GGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 55638 0.66 0.969098
Target:  5'- cGGCGGGGcgGUggGCCCagUCCGcguuGGCGa -3'
miRNA:   3'- -CCGCCUCuuUA--UGGGagAGGU----CCGUc -5'
4036 5' -54.4 NC_001650.1 + 57813 0.69 0.885639
Target:  5'- cGGCGGGGGcgcgaaggGCaucgCUCCGGGCGGu -3'
miRNA:   3'- -CCGCCUCUuua-----UGgga-GAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 57937 0.69 0.878641
Target:  5'- cGGcCGGGGGcggcACCCUCagCUGGGCGGg -3'
miRNA:   3'- -CC-GCCUCUuua-UGGGAGa-GGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 62910 0.69 0.877215
Target:  5'- aGGCGGcgcgcacGCCCUCUaucUCGGGCGGg -3'
miRNA:   3'- -CCGCCucuuua-UGGGAGA---GGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 63609 0.73 0.691795
Target:  5'- uGGCGGGGGcgggGGUGCCCUC---GGGCGGc -3'
miRNA:   3'- -CCGCCUCU----UUAUGGGAGaggUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 66559 0.66 0.962711
Target:  5'- gGGCGGGGu-GUGCCCcacgC-CCGGGguCAGg -3'
miRNA:   3'- -CCGCCUCuuUAUGGGa---GaGGUCC--GUC- -5'
4036 5' -54.4 NC_001650.1 + 67428 0.67 0.938221
Target:  5'- uGGCGauGAGGA--GCCCcggUCUCCAGaGCAu -3'
miRNA:   3'- -CCGC--CUCUUuaUGGG---AGAGGUC-CGUc -5'
4036 5' -54.4 NC_001650.1 + 67523 0.67 0.933325
Target:  5'- aGGgGGAGGcgacgGAUGCCC-CgagCGGGCGGg -3'
miRNA:   3'- -CCgCCUCU-----UUAUGGGaGag-GUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 68200 0.67 0.933325
Target:  5'- aGUGGAuAGggGCCCUCUUUAGGgAGg -3'
miRNA:   3'- cCGCCUcUUuaUGGGAGAGGUCCgUC- -5'
4036 5' -54.4 NC_001650.1 + 70691 0.72 0.741364
Target:  5'- gGGCGGGauGggGUACCC-CUCCcguaAGGCu- -3'
miRNA:   3'- -CCGCCU--CuuUAUGGGaGAGG----UCCGuc -5'
4036 5' -54.4 NC_001650.1 + 71992 0.67 0.951496
Target:  5'- gGGCGGGGcg--GCCgUCUCCAaGG-AGg -3'
miRNA:   3'- -CCGCCUCuuuaUGGgAGAGGU-CCgUC- -5'
4036 5' -54.4 NC_001650.1 + 74231 0.74 0.630765
Target:  5'- cGCGGAcGAGAUAUCCaagCUCCAGGagaGGg -3'
miRNA:   3'- cCGCCU-CUUUAUGGGa--GAGGUCCg--UC- -5'
4036 5' -54.4 NC_001650.1 + 74636 0.66 0.969098
Target:  5'- -uCGGAGAcc--CCCUC-CCGGGCGu -3'
miRNA:   3'- ccGCCUCUuuauGGGAGaGGUCCGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.