miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4036 5' -54.4 NC_001650.1 + 75335 0.66 0.968497
Target:  5'- aGGCGGuGAGgcgcgcguccuccAUGCCCUCccaCCcggugaccuggguGGGCAGc -3'
miRNA:   3'- -CCGCCuCUU-------------UAUGGGAGa--GG-------------UCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 75713 0.66 0.958832
Target:  5'- -cUGGGGAGuacCCCUCcaccccgUCCAGGUAGa -3'
miRNA:   3'- ccGCCUCUUuauGGGAG-------AGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 82642 0.68 0.911362
Target:  5'- uGGCGGAGaAGAUACCCgCgugCgGGGUc- -3'
miRNA:   3'- -CCGCCUC-UUUAUGGGaGa--GgUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 84434 0.7 0.840475
Target:  5'- gGGCGGAGuuugacucagaGAGgcuauCCCUCUCggagAGGCAGg -3'
miRNA:   3'- -CCGCCUC-----------UUUau---GGGAGAGg---UCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 85589 0.69 0.863993
Target:  5'- cGGUGGAGuacGUGCCC---CCGGGCAa -3'
miRNA:   3'- -CCGCCUCuu-UAUGGGagaGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 86591 0.68 0.911362
Target:  5'- cGuCGGAGGA--GCCCUCcUCCAGGa-- -3'
miRNA:   3'- cC-GCCUCUUuaUGGGAG-AGGUCCguc -5'
4036 5' -54.4 NC_001650.1 + 87022 0.68 0.922819
Target:  5'- --gGGAGAAG-ACCagcaUCUCCAGGCc- -3'
miRNA:   3'- ccgCCUCUUUaUGGg---AGAGGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 88317 0.74 0.640982
Target:  5'- cGGCGGGGAGGUGuuCgugUUCgAGGCGGa -3'
miRNA:   3'- -CCGCCUCUUUAUggGa--GAGgUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 88477 0.68 0.898962
Target:  5'- aGGCaGGAGuu---CUC-CUCCGGGCGGg -3'
miRNA:   3'- -CCG-CCUCuuuauGGGaGAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 89161 0.69 0.871424
Target:  5'- uGGCGGAcagGGuccuGUGCCCggggCUCCGGgGCGa -3'
miRNA:   3'- -CCGCCU---CUu---UAUGGGa---GAGGUC-CGUc -5'
4036 5' -54.4 NC_001650.1 + 91054 0.69 0.878641
Target:  5'- gGGCGGuGggGUACUC-CUUCuuGGGCAc -3'
miRNA:   3'- -CCGCCuCuuUAUGGGaGAGG--UCCGUc -5'
4036 5' -54.4 NC_001650.1 + 93919 0.69 0.885639
Target:  5'- --aGGAGAGGUGCCUggagggcuUCcCCAGGCAc -3'
miRNA:   3'- ccgCCUCUUUAUGGG--------AGaGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 94488 0.71 0.788556
Target:  5'- aGGCGG-GggGUGgUCUC-CCAGGCu- -3'
miRNA:   3'- -CCGCCuCuuUAUgGGAGaGGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 96200 0.67 0.951496
Target:  5'- cGGCGaGAGA---GCCa--UCCGGGCAa -3'
miRNA:   3'- -CCGC-CUCUuuaUGGgagAGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 98126 0.66 0.965043
Target:  5'- cGGCGGAcugguuccaguacuGGGAgGCCUUCUUgAGGCu- -3'
miRNA:   3'- -CCGCCU--------------CUUUaUGGGAGAGgUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 101318 0.69 0.891747
Target:  5'- cGuaGGAGggGUAcagggcuauauccCCCagCUCCAGGCAc -3'
miRNA:   3'- -CcgCCUCuuUAU-------------GGGa-GAGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 101941 0.67 0.938221
Target:  5'- aGCGGGGGGcu-CCCUCcUCCGGGa-- -3'
miRNA:   3'- cCGCCUCUUuauGGGAG-AGGUCCguc -5'
4036 5' -54.4 NC_001650.1 + 102190 0.66 0.969098
Target:  5'- gGGCcccAGAGAcACCCccaggcgcaCUCCAGGCAGu -3'
miRNA:   3'- -CCGcc-UCUUUaUGGGa--------GAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 103081 0.67 0.947304
Target:  5'- cGCGGAGAucauaAAUACCaUCUaCAGGUGGu -3'
miRNA:   3'- cCGCCUCU-----UUAUGGgAGAgGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 105408 0.66 0.959195
Target:  5'- aGGCaGAuaaguaGAAGUAcCCCUCuUCCAGGUg- -3'
miRNA:   3'- -CCGcCU------CUUUAU-GGGAG-AGGUCCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.