Results 61 - 80 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4036 | 5' | -54.4 | NC_001650.1 | + | 106012 | 0.66 | 0.969098 |
Target: 5'- uGCaGGAGGAccucAUGCUCUUUCCccAGGCGa -3' miRNA: 3'- cCG-CCUCUU----UAUGGGAGAGG--UCCGUc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 107683 | 0.66 | 0.964056 |
Target: 5'- cGCGGAGAAGUGCCUgccuguuauucaguuUaggugcgacgcCUCCAGGgccCAGg -3' miRNA: 3'- cCGCCUCUUUAUGGG---------------A-----------GAGGUCC---GUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 108512 | 0.69 | 0.871424 |
Target: 5'- gGGUGGAGggGUACUC-C-CCagAGGCAa -3' miRNA: 3'- -CCGCCUCuuUAUGGGaGaGG--UCCGUc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 108920 | 0.7 | 0.856353 |
Target: 5'- cGCGGAGcug-GCCUUCUCCcuGGGCc- -3' miRNA: 3'- cCGCCUCuuuaUGGGAGAGG--UCCGuc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 111195 | 0.69 | 0.892414 |
Target: 5'- aGGCGGcucAGGcg-GCCCgcgCccCCAGGCAGg -3' miRNA: 3'- -CCGCC---UCUuuaUGGGa--Ga-GGUCCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 113818 | 0.68 | 0.905278 |
Target: 5'- gGGCcgucuccugGGAGGAGUGCaguaUCUCCAGGUc- -3' miRNA: 3'- -CCG---------CCUCUUUAUGgg--AGAGGUCCGuc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 115240 | 0.68 | 0.922819 |
Target: 5'- uGGCGGucuacaAGAAggACCC-CggagccaggCCGGGCAGg -3' miRNA: 3'- -CCGCC------UCUUuaUGGGaGa--------GGUCCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 117069 | 0.71 | 0.779363 |
Target: 5'- gGGCGGGGAGAUcACCgUCUaCCGGuGCc- -3' miRNA: 3'- -CCGCCUCUUUA-UGGgAGA-GGUC-CGuc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 117175 | 0.67 | 0.94288 |
Target: 5'- aGGgGGAGA----CCCUCUCCAGa--- -3' miRNA: 3'- -CCgCCUCUuuauGGGAGAGGUCcguc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 120757 | 0.67 | 0.947304 |
Target: 5'- gGGCauagaGGAGAuc-ACCUUCUCCuucuGGCAc -3' miRNA: 3'- -CCG-----CCUCUuuaUGGGAGAGGu---CCGUc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 122666 | 0.68 | 0.928191 |
Target: 5'- aGGCGGucaAGGAG-ACCCUC-CUGGGCu- -3' miRNA: 3'- -CCGCC---UCUUUaUGGGAGaGGUCCGuc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 122698 | 0.66 | 0.969098 |
Target: 5'- aGGCGGuacagGGAGGUGgCCUC-CCuGGCc- -3' miRNA: 3'- -CCGCC-----UCUUUAUgGGAGaGGuCCGuc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 123522 | 0.71 | 0.770037 |
Target: 5'- -aCGGAGggGUGCCC-CUCaAGGaCAGg -3' miRNA: 3'- ccGCCUCuuUAUGGGaGAGgUCC-GUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 124121 | 0.68 | 0.922819 |
Target: 5'- cGGCGGGucGGgccagACCCUCggCGGGCAc -3' miRNA: 3'- -CCGCCUcuUUa----UGGGAGagGUCCGUc -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 125113 | 0.73 | 0.681697 |
Target: 5'- aGGCGGucAGcgGCCCgaacagCCAGGCAGa -3' miRNA: 3'- -CCGCCucUUuaUGGGaga---GGUCCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 126039 | 0.75 | 0.559694 |
Target: 5'- gGGCGGcGAAG-ACCCUC-CCAcGGCAGc -3' miRNA: 3'- -CCGCCuCUUUaUGGGAGaGGU-CCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 129156 | 0.66 | 0.953901 |
Target: 5'- gGGCGGcccucuucGCCCUCUCgGaGGCGGu -3' miRNA: 3'- -CCGCCucuuua--UGGGAGAGgU-CCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 130092 | 0.66 | 0.96601 |
Target: 5'- gGGgGGAGAGccGCCCgccaagC-CCAaGGCGGa -3' miRNA: 3'- -CCgCCUCUUuaUGGGa-----GaGGU-CCGUC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 130295 | 0.67 | 0.933325 |
Target: 5'- cGCGGGGGGAgGCCaacgCCAGGCuGg -3' miRNA: 3'- cCGCCUCUUUaUGGgagaGGUCCGuC- -5' |
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4036 | 5' | -54.4 | NC_001650.1 | + | 131108 | 0.7 | 0.848512 |
Target: 5'- aGGCGaGGGGAGU-CCCUC-CgGGGCGc -3' miRNA: 3'- -CCGC-CUCUUUAuGGGAGaGgUCCGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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