miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4036 5' -54.4 NC_001650.1 + 183555 0.79 0.351471
Target:  5'- uGGgGGAguGAGGUcACCCgUCUCCGGGCAGa -3'
miRNA:   3'- -CCgCCU--CUUUA-UGGG-AGAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 181775 0.67 0.94288
Target:  5'- uGGgGGGGAAGggacgGCCCcgcccgcuuccUCUuuacagacCCGGGCAGg -3'
miRNA:   3'- -CCgCCUCUUUa----UGGG-----------AGA--------GGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 180526 0.7 0.81526
Target:  5'- cGGCGGGGAccauGUGCCC-CUuaagggCCAauGGCAGa -3'
miRNA:   3'- -CCGCCUCUu---UAUGGGaGA------GGU--CCGUC- -5'
4036 5' -54.4 NC_001650.1 + 177741 0.81 0.299902
Target:  5'- aGGCGGAcGGAggACCC-CUCCGGGCAc -3'
miRNA:   3'- -CCGCCU-CUUuaUGGGaGAGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 175345 0.66 0.96601
Target:  5'- --gGGAGGGcgcGCCgCUC-CCAGGCAGc -3'
miRNA:   3'- ccgCCUCUUua-UGG-GAGaGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 173313 0.68 0.922269
Target:  5'- uGGUGGAGGgugguGGUGgUCUCugagguuUCCAGGUAGa -3'
miRNA:   3'- -CCGCCUCU-----UUAUgGGAG-------AGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 171748 0.69 0.885639
Target:  5'- aGGCGGAcgGggGU-CCCUC-CgGGGguGg -3'
miRNA:   3'- -CCGCCU--CuuUAuGGGAGaGgUCCguC- -5'
4036 5' -54.4 NC_001650.1 + 170783 0.67 0.938221
Target:  5'- -aUGGAGAG--GCCCUg-CCAGGCAu -3'
miRNA:   3'- ccGCCUCUUuaUGGGAgaGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 162663 1.03 0.012998
Target:  5'- uGGCGGAGAAAU-CCCUCUCCAGGCAGg -3'
miRNA:   3'- -CCGCCUCUUUAuGGGAGAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 161368 0.69 0.874336
Target:  5'- cGGgGGAGAAGUGgcucagcucagagacCgCCUCcUCGGGCAGg -3'
miRNA:   3'- -CCgCCUCUUUAU---------------G-GGAGaGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 159779 0.67 0.951496
Target:  5'- aGGCGaGGAAGgccuCCCUCUCCcgcucguaGGGCc- -3'
miRNA:   3'- -CCGCcUCUUUau--GGGAGAGG--------UCCGuc -5'
4036 5' -54.4 NC_001650.1 + 157481 0.68 0.898962
Target:  5'- aGGCGGcgcacaGCCC-CUCCAGGcCGGg -3'
miRNA:   3'- -CCGCCucuuuaUGGGaGAGGUCC-GUC- -5'
4036 5' -54.4 NC_001650.1 + 156913 0.67 0.94288
Target:  5'- --aGGAGAGccGUGCCCUCUUgcGGCAc -3'
miRNA:   3'- ccgCCUCUU--UAUGGGAGAGguCCGUc -5'
4036 5' -54.4 NC_001650.1 + 151353 0.68 0.928191
Target:  5'- uGGUGGAGGAGgaucuuUAUUgUCUUCAGGCu- -3'
miRNA:   3'- -CCGCCUCUUU------AUGGgAGAGGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 148919 0.67 0.951496
Target:  5'- uGGUGGGGugacacuGGaGCCCgUCUCcCGGGCAa -3'
miRNA:   3'- -CCGCCUCu------UUaUGGG-AGAG-GUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 145753 0.68 0.911362
Target:  5'- uGGCGGGcAGGUccGCCgggUUCCAGGCGGu -3'
miRNA:   3'- -CCGCCUcUUUA--UGGga-GAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 139044 0.67 0.951496
Target:  5'- uGUGGGGG--UACCCggCUCCGGGgGa -3'
miRNA:   3'- cCGCCUCUuuAUGGGa-GAGGUCCgUc -5'
4036 5' -54.4 NC_001650.1 + 136630 0.68 0.928191
Target:  5'- gGGCGucGggGcGCCCUgaggCUCCgcGGGCAGa -3'
miRNA:   3'- -CCGCcuCuuUaUGGGA----GAGG--UCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 136093 0.69 0.863993
Target:  5'- aGGCGGGGGcg-GCCUUgUCCAGccccagggucaGCAGg -3'
miRNA:   3'- -CCGCCUCUuuaUGGGAgAGGUC-----------CGUC- -5'
4036 5' -54.4 NC_001650.1 + 133645 0.69 0.892414
Target:  5'- cGGUGGGGGcg-GCCCUgaCCGGGUu- -3'
miRNA:   3'- -CCGCCUCUuuaUGGGAgaGGUCCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.