miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4036 5' -54.4 NC_001650.1 + 132610 0.67 0.938221
Target:  5'- cGCGGAGGcgcugGCCCccaacCUgCAGGCGGc -3'
miRNA:   3'- cCGCCUCUuua--UGGGa----GAgGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 132171 0.73 0.681697
Target:  5'- gGGCGGAGAAgGUGCCCgugaCCGGGUu- -3'
miRNA:   3'- -CCGCCUCUU-UAUGGGaga-GGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 131187 0.67 0.941507
Target:  5'- uGgGGAGAAAUACCCcgaaucgguuaaUUUCCcuucccggggcgcgAGGCAGc -3'
miRNA:   3'- cCgCCUCUUUAUGGG------------AGAGG--------------UCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 131108 0.7 0.848512
Target:  5'- aGGCGaGGGGAGU-CCCUC-CgGGGCGc -3'
miRNA:   3'- -CCGC-CUCUUUAuGGGAGaGgUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 130295 0.67 0.933325
Target:  5'- cGCGGGGGGAgGCCaacgCCAGGCuGg -3'
miRNA:   3'- cCGCCUCUUUaUGGgagaGGUCCGuC- -5'
4036 5' -54.4 NC_001650.1 + 130092 0.66 0.96601
Target:  5'- gGGgGGAGAGccGCCCgccaagC-CCAaGGCGGa -3'
miRNA:   3'- -CCgCCUCUUuaUGGGa-----GaGGU-CCGUC- -5'
4036 5' -54.4 NC_001650.1 + 129156 0.66 0.953901
Target:  5'- gGGCGGcccucuucGCCCUCUCgGaGGCGGu -3'
miRNA:   3'- -CCGCCucuuua--UGGGAGAGgU-CCGUC- -5'
4036 5' -54.4 NC_001650.1 + 126039 0.75 0.559694
Target:  5'- gGGCGGcGAAG-ACCCUC-CCAcGGCAGc -3'
miRNA:   3'- -CCGCCuCUUUaUGGGAGaGGU-CCGUC- -5'
4036 5' -54.4 NC_001650.1 + 125113 0.73 0.681697
Target:  5'- aGGCGGucAGcgGCCCgaacagCCAGGCAGa -3'
miRNA:   3'- -CCGCCucUUuaUGGGaga---GGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 124121 0.68 0.922819
Target:  5'- cGGCGGGucGGgccagACCCUCggCGGGCAc -3'
miRNA:   3'- -CCGCCUcuUUa----UGGGAGagGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 123522 0.71 0.770037
Target:  5'- -aCGGAGggGUGCCC-CUCaAGGaCAGg -3'
miRNA:   3'- ccGCCUCuuUAUGGGaGAGgUCC-GUC- -5'
4036 5' -54.4 NC_001650.1 + 122698 0.66 0.969098
Target:  5'- aGGCGGuacagGGAGGUGgCCUC-CCuGGCc- -3'
miRNA:   3'- -CCGCC-----UCUUUAUgGGAGaGGuCCGuc -5'
4036 5' -54.4 NC_001650.1 + 122666 0.68 0.928191
Target:  5'- aGGCGGucaAGGAG-ACCCUC-CUGGGCu- -3'
miRNA:   3'- -CCGCC---UCUUUaUGGGAGaGGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 120757 0.67 0.947304
Target:  5'- gGGCauagaGGAGAuc-ACCUUCUCCuucuGGCAc -3'
miRNA:   3'- -CCG-----CCUCUuuaUGGGAGAGGu---CCGUc -5'
4036 5' -54.4 NC_001650.1 + 117175 0.67 0.94288
Target:  5'- aGGgGGAGA----CCCUCUCCAGa--- -3'
miRNA:   3'- -CCgCCUCUuuauGGGAGAGGUCcguc -5'
4036 5' -54.4 NC_001650.1 + 117069 0.71 0.779363
Target:  5'- gGGCGGGGAGAUcACCgUCUaCCGGuGCc- -3'
miRNA:   3'- -CCGCCUCUUUA-UGGgAGA-GGUC-CGuc -5'
4036 5' -54.4 NC_001650.1 + 115240 0.68 0.922819
Target:  5'- uGGCGGucuacaAGAAggACCC-CggagccaggCCGGGCAGg -3'
miRNA:   3'- -CCGCC------UCUUuaUGGGaGa--------GGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 113818 0.68 0.905278
Target:  5'- gGGCcgucuccugGGAGGAGUGCaguaUCUCCAGGUc- -3'
miRNA:   3'- -CCG---------CCUCUUUAUGgg--AGAGGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 111195 0.69 0.892414
Target:  5'- aGGCGGcucAGGcg-GCCCgcgCccCCAGGCAGg -3'
miRNA:   3'- -CCGCC---UCUuuaUGGGa--Ga-GGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 108920 0.7 0.856353
Target:  5'- cGCGGAGcug-GCCUUCUCCcuGGGCc- -3'
miRNA:   3'- cCGCCUCuuuaUGGGAGAGG--UCCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.