miRNA display CGI


Results 81 - 100 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4036 5' -54.4 NC_001650.1 + 48166 0.67 0.933325
Target:  5'- gGGCuGGGGGAGUACUCUCUgCCccucGuGCGGu -3'
miRNA:   3'- -CCG-CCUCUUUAUGGGAGA-GGu---C-CGUC- -5'
4036 5' -54.4 NC_001650.1 + 47947 0.7 0.841287
Target:  5'- gGGgGGAGGGuugcccgagacaggcUGCCCUCUCuCAGGgAGu -3'
miRNA:   3'- -CCgCCUCUUu--------------AUGGGAGAG-GUCCgUC- -5'
4036 5' -54.4 NC_001650.1 + 46484 0.66 0.969098
Target:  5'- cGgGGucAGAAGUucACCCUCUCCccGGCGu -3'
miRNA:   3'- cCgCC--UCUUUA--UGGGAGAGGu-CCGUc -5'
4036 5' -54.4 NC_001650.1 + 43303 0.68 0.928191
Target:  5'- aGGUGGuuGAAAauCCCUCUCUAuuGGCAc -3'
miRNA:   3'- -CCGCCu-CUUUauGGGAGAGGU--CCGUc -5'
4036 5' -54.4 NC_001650.1 + 34454 0.73 0.701844
Target:  5'- gGGUGGAGAGGgcgGCCCaggagCCGGGCGc -3'
miRNA:   3'- -CCGCCUCUUUa--UGGGaga--GGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 29024 0.72 0.76059
Target:  5'- cGGCcGAGGAGUACCCgcacgccCUCgGGGCGc -3'
miRNA:   3'- -CCGcCUCUUUAUGGGa------GAGgUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 28410 0.81 0.273158
Target:  5'- gGGCGGGGAGcugACCCUCUacaggucccCCGGGCGGc -3'
miRNA:   3'- -CCGCCUCUUua-UGGGAGA---------GGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 28109 0.67 0.951496
Target:  5'- gGGCGGugcuGGAGGUGCCC-CU--GGGCAa -3'
miRNA:   3'- -CCGCC----UCUUUAUGGGaGAggUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 28017 0.81 0.299902
Target:  5'- cGCGGAGAug-GCCCUggCCGGGCAGu -3'
miRNA:   3'- cCGCCUCUuuaUGGGAgaGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 26933 0.8 0.314016
Target:  5'- gGGCGGGGAGGUGCCC---CCAGGCGc -3'
miRNA:   3'- -CCGCCUCUUUAUGGGagaGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 26739 0.73 0.661386
Target:  5'- cGGCcuGGAGGGgcuGUGCgCCgcCUCCAGGCAGc -3'
miRNA:   3'- -CCG--CCUCUU---UAUG-GGa-GAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 26517 0.71 0.788556
Target:  5'- cGUGGAGGAGgcguCCCUC-CUGGGCAa -3'
miRNA:   3'- cCGCCUCUUUau--GGGAGaGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 25409 0.78 0.426517
Target:  5'- gGGCGGGGGAccugACCCUCcUCagGGGCAGg -3'
miRNA:   3'- -CCGCCUCUUua--UGGGAG-AGg-UCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 23663 0.66 0.955458
Target:  5'- aGGgGGAGGucuuUACCCUCcugacCCGGuGCAa -3'
miRNA:   3'- -CCgCCUCUuu--AUGGGAGa----GGUC-CGUc -5'
4036 5' -54.4 NC_001650.1 + 21683 0.69 0.871424
Target:  5'- cGCGGGGggGcccugcACCCUgUCCAGGgAc -3'
miRNA:   3'- cCGCCUCuuUa-----UGGGAgAGGUCCgUc -5'
4036 5' -54.4 NC_001650.1 + 16848 0.79 0.351471
Target:  5'- uGGgGGAguGAGGUcACCCgUCUCCGGGCAGa -3'
miRNA:   3'- -CCgCCU--CUUUA-UGGG-AGAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 15068 0.67 0.94288
Target:  5'- uGGgGGGGAAGggacgGCCCcgcccgcuuccUCUuuacagacCCGGGCAGg -3'
miRNA:   3'- -CCgCCUCUUUa----UGGG-----------AGA--------GGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 13819 0.7 0.81526
Target:  5'- cGGCGGGGAccauGUGCCC-CUuaagggCCAauGGCAGa -3'
miRNA:   3'- -CCGCCUCUu---UAUGGGaGA------GGU--CCGUC- -5'
4036 5' -54.4 NC_001650.1 + 11034 0.81 0.299902
Target:  5'- aGGCGGAcGGAggACCC-CUCCGGGCAc -3'
miRNA:   3'- -CCGCCU-CUUuaUGGGaGAGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 8638 0.66 0.96601
Target:  5'- --gGGAGGGcgcGCCgCUC-CCAGGCAGc -3'
miRNA:   3'- ccgCCUCUUua-UGG-GAGaGGUCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.