miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4036 5' -54.4 NC_001650.1 + 89161 0.69 0.871424
Target:  5'- uGGCGGAcagGGuccuGUGCCCggggCUCCGGgGCGa -3'
miRNA:   3'- -CCGCCU---CUu---UAUGGGa---GAGGUC-CGUc -5'
4036 5' -54.4 NC_001650.1 + 21683 0.69 0.871424
Target:  5'- cGCGGGGggGcccugcACCCUgUCCAGGgAc -3'
miRNA:   3'- cCGCCUCuuUa-----UGGGAgAGGUCCgUc -5'
4036 5' -54.4 NC_001650.1 + 34454 0.73 0.701844
Target:  5'- gGGUGGAGAGGgcgGCCCaggagCCGGGCGc -3'
miRNA:   3'- -CCGCCUCUUUa--UGGGaga--GGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 132171 0.73 0.681697
Target:  5'- gGGCGGAGAAgGUGCCCgugaCCGGGUu- -3'
miRNA:   3'- -CCGCCUCUU-UAUGGGaga-GGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 125113 0.73 0.681697
Target:  5'- aGGCGGucAGcgGCCCgaacagCCAGGCAGa -3'
miRNA:   3'- -CCGCCucUUuaUGGGaga---GGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 26739 0.73 0.661386
Target:  5'- cGGCcuGGAGGGgcuGUGCgCCgcCUCCAGGCAGc -3'
miRNA:   3'- -CCG--CCUCUU---UAUG-GGa-GAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 88317 0.74 0.640982
Target:  5'- cGGCGGGGAGGUGuuCgugUUCgAGGCGGa -3'
miRNA:   3'- -CCGCCUCUUUAUggGa--GAGgUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 74231 0.74 0.630765
Target:  5'- cGCGGAcGAGAUAUCCaagCUCCAGGagaGGg -3'
miRNA:   3'- cCGCCU-CUUUAUGGGa--GAGGUCCg--UC- -5'
4036 5' -54.4 NC_001650.1 + 177741 0.81 0.299902
Target:  5'- aGGCGGAcGGAggACCC-CUCCGGGCAc -3'
miRNA:   3'- -CCGCCU-CUUuaUGGGaGAGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 11034 0.81 0.299902
Target:  5'- aGGCGGAcGGAggACCC-CUCCGGGCAc -3'
miRNA:   3'- -CCGCCU-CUUuaUGGGaGAGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 29024 0.72 0.76059
Target:  5'- cGGCcGAGGAGUACCCgcacgccCUCgGGGCGc -3'
miRNA:   3'- -CCGcCUCUUUAUGGGa------GAGgUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 123522 0.71 0.770037
Target:  5'- -aCGGAGggGUGCCC-CUCaAGGaCAGg -3'
miRNA:   3'- ccGCCUCuuUAUGGGaGAGgUCC-GUC- -5'
4036 5' -54.4 NC_001650.1 + 85589 0.69 0.863993
Target:  5'- cGGUGGAGuacGUGCCC---CCGGGCAa -3'
miRNA:   3'- -CCGCCUCuu-UAUGGGagaGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 136093 0.69 0.863993
Target:  5'- aGGCGGGGGcg-GCCUUgUCCAGccccagggucaGCAGg -3'
miRNA:   3'- -CCGCCUCUuuaUGGGAgAGGUC-----------CGUC- -5'
4036 5' -54.4 NC_001650.1 + 108920 0.7 0.856353
Target:  5'- cGCGGAGcug-GCCUUCUCCcuGGGCc- -3'
miRNA:   3'- cCGCCUCuuuaUGGGAGAGG--UCCGuc -5'
4036 5' -54.4 NC_001650.1 + 131108 0.7 0.848512
Target:  5'- aGGCGaGGGGAGU-CCCUC-CgGGGCGc -3'
miRNA:   3'- -CCGC-CUCUUUAuGGGAGaGgUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 84434 0.7 0.840475
Target:  5'- gGGCGGAGuuugacucagaGAGgcuauCCCUCUCggagAGGCAGg -3'
miRNA:   3'- -CCGCCUC-----------UUUau---GGGAGAGg---UCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 50848 0.7 0.840475
Target:  5'- gGGCGGcGAGcUGCCCUUUCUgcuGGcGCAGc -3'
miRNA:   3'- -CCGCCuCUUuAUGGGAGAGG---UC-CGUC- -5'
4036 5' -54.4 NC_001650.1 + 52786 0.7 0.832248
Target:  5'- cGGCGGcGGcg-GCCCUCggggcCCGGGCGc -3'
miRNA:   3'- -CCGCCuCUuuaUGGGAGa----GGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 26517 0.71 0.788556
Target:  5'- cGUGGAGGAGgcguCCCUC-CUGGGCAa -3'
miRNA:   3'- cCGCCUCUUUau--GGGAGaGGUCCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.