miRNA display CGI


Results 81 - 100 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4036 5' -54.4 NC_001650.1 + 113818 0.68 0.905278
Target:  5'- gGGCcgucuccugGGAGGAGUGCaguaUCUCCAGGUc- -3'
miRNA:   3'- -CCG---------CCUCUUUAUGgg--AGAGGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 70691 0.72 0.741364
Target:  5'- gGGCGGGauGggGUACCC-CUCCcguaAGGCu- -3'
miRNA:   3'- -CCGCCU--CuuUAUGGGaGAGG----UCCGuc -5'
4036 5' -54.4 NC_001650.1 + 63609 0.73 0.691795
Target:  5'- uGGCGGGGGcgggGGUGCCCUC---GGGCGGc -3'
miRNA:   3'- -CCGCCUCU----UUAUGGGAGaggUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 126039 0.75 0.559694
Target:  5'- gGGCGGcGAAG-ACCCUC-CCAcGGCAGc -3'
miRNA:   3'- -CCGCCuCUUUaUGGGAGaGGU-CCGUC- -5'
4036 5' -54.4 NC_001650.1 + 25409 0.78 0.426517
Target:  5'- gGGCGGGGGAccugACCCUCcUCagGGGCAGg -3'
miRNA:   3'- -CCGCCUCUUua--UGGGAG-AGg-UCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 183555 0.79 0.351471
Target:  5'- uGGgGGAguGAGGUcACCCgUCUCCGGGCAGa -3'
miRNA:   3'- -CCgCCU--CUUUA-UGGG-AGAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 16848 0.79 0.351471
Target:  5'- uGGgGGAguGAGGUcACCCgUCUCCGGGCAGa -3'
miRNA:   3'- -CCgCCU--CUUUA-UGGG-AGAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 26933 0.8 0.314016
Target:  5'- gGGCGGGGAGGUGCCC---CCAGGCGc -3'
miRNA:   3'- -CCGCCUCUUUAUGGGagaGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 28017 0.81 0.299902
Target:  5'- cGCGGAGAug-GCCCUggCCGGGCAGu -3'
miRNA:   3'- cCGCCUCUuuaUGGGAgaGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 117069 0.71 0.779363
Target:  5'- gGGCGGGGAGAUcACCgUCUaCCGGuGCc- -3'
miRNA:   3'- -CCGCCUCUUUA-UGGgAGA-GGUC-CGuc -5'
4036 5' -54.4 NC_001650.1 + 94488 0.71 0.788556
Target:  5'- aGGCGG-GggGUGgUCUC-CCAGGCu- -3'
miRNA:   3'- -CCGCCuCuuUAUgGGAGaGGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 13819 0.7 0.81526
Target:  5'- cGGCGGGGAccauGUGCCC-CUuaagggCCAauGGCAGa -3'
miRNA:   3'- -CCGCCUCUu---UAUGGGaGA------GGU--CCGUC- -5'
4036 5' -54.4 NC_001650.1 + 157481 0.68 0.898962
Target:  5'- aGGCGGcgcacaGCCC-CUCCAGGcCGGg -3'
miRNA:   3'- -CCGCCucuuuaUGGGaGAGGUCC-GUC- -5'
4036 5' -54.4 NC_001650.1 + 133645 0.69 0.892414
Target:  5'- cGGUGGGGGcg-GCCCUgaCCGGGUu- -3'
miRNA:   3'- -CCGCCUCUuuaUGGGAgaGGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 101318 0.69 0.891747
Target:  5'- cGuaGGAGggGUAcagggcuauauccCCCagCUCCAGGCAc -3'
miRNA:   3'- -CcgCCUCuuUAU-------------GGGa-GAGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 93919 0.69 0.885639
Target:  5'- --aGGAGAGGUGCCUggagggcuUCcCCAGGCAc -3'
miRNA:   3'- ccgCCUCUUUAUGGG--------AGaGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 62910 0.69 0.877215
Target:  5'- aGGCGGcgcgcacGCCCUCUaucUCGGGCGGg -3'
miRNA:   3'- -CCGCCucuuua-UGGGAGA---GGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 161368 0.69 0.874336
Target:  5'- cGGgGGAGAAGUGgcucagcucagagacCgCCUCcUCGGGCAGg -3'
miRNA:   3'- -CCgCCUCUUUAU---------------G-GGAGaGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 47947 0.7 0.841287
Target:  5'- gGGgGGAGGGuugcccgagacaggcUGCCCUCUCuCAGGgAGu -3'
miRNA:   3'- -CCgCCUCUUu--------------AUGGGAGAG-GUCCgUC- -5'
4036 5' -54.4 NC_001650.1 + 180526 0.7 0.81526
Target:  5'- cGGCGGGGAccauGUGCCC-CUuaagggCCAauGGCAGa -3'
miRNA:   3'- -CCGCCUCUu---UAUGGGaGA------GGU--CCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.