miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4036 5' -54.4 NC_001650.1 + 6606 0.68 0.922269
Target:  5'- uGGUGGAGGgugguGGUGgUCUCugagguuUCCAGGUAGa -3'
miRNA:   3'- -CCGCCUCU-----UUAUgGGAG-------AGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 157481 0.68 0.898962
Target:  5'- aGGCGGcgcacaGCCC-CUCCAGGcCGGg -3'
miRNA:   3'- -CCGCCucuuuaUGGGaGAGGUCC-GUC- -5'
4036 5' -54.4 NC_001650.1 + 94488 0.71 0.788556
Target:  5'- aGGCGG-GggGUGgUCUC-CCAGGCu- -3'
miRNA:   3'- -CCGCCuCuuUAUgGGAGaGGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 16848 0.79 0.351471
Target:  5'- uGGgGGAguGAGGUcACCCgUCUCCGGGCAGa -3'
miRNA:   3'- -CCgCCU--CUUUA-UGGG-AGAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 28109 0.67 0.951496
Target:  5'- gGGCGGugcuGGAGGUGCCC-CU--GGGCAa -3'
miRNA:   3'- -CCGCC----UCUUUAUGGGaGAggUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 68200 0.67 0.933325
Target:  5'- aGUGGAuAGggGCCCUCUUUAGGgAGg -3'
miRNA:   3'- cCGCCUcUUuaUGGGAGAGGUCCgUC- -5'
4036 5' -54.4 NC_001650.1 + 101318 0.69 0.891747
Target:  5'- cGuaGGAGggGUAcagggcuauauccCCCagCUCCAGGCAc -3'
miRNA:   3'- -CcgCCUCuuUAU-------------GGGa-GAGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 26933 0.8 0.314016
Target:  5'- gGGCGGGGAGGUGCCC---CCAGGCGc -3'
miRNA:   3'- -CCGCCUCUUUAUGGGagaGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 48166 0.67 0.933325
Target:  5'- gGGCuGGGGGAGUACUCUCUgCCccucGuGCGGu -3'
miRNA:   3'- -CCG-CCUCUUUAUGGGAGA-GGu---C-CGUC- -5'
4036 5' -54.4 NC_001650.1 + 28017 0.81 0.299902
Target:  5'- cGCGGAGAug-GCCCUggCCGGGCAGu -3'
miRNA:   3'- cCGCCUCUuuaUGGGAgaGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 133645 0.69 0.892414
Target:  5'- cGGUGGGGGcg-GCCCUgaCCGGGUu- -3'
miRNA:   3'- -CCGCCUCUuuaUGGGAgaGGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 173313 0.68 0.922269
Target:  5'- uGGUGGAGGgugguGGUGgUCUCugagguuUCCAGGUAGa -3'
miRNA:   3'- -CCGCCUCU-----UUAUgGGAG-------AGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 161368 0.69 0.874336
Target:  5'- cGGgGGAGAAGUGgcucagcucagagacCgCCUCcUCGGGCAGg -3'
miRNA:   3'- -CCgCCUCUUUAU---------------G-GGAGaGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 13819 0.7 0.81526
Target:  5'- cGGCGGGGAccauGUGCCC-CUuaagggCCAauGGCAGa -3'
miRNA:   3'- -CCGCCUCUu---UAUGGGaGA------GGU--CCGUC- -5'
4036 5' -54.4 NC_001650.1 + 63609 0.73 0.691795
Target:  5'- uGGCGGGGGcgggGGUGCCCUC---GGGCGGc -3'
miRNA:   3'- -CCGCCUCU----UUAUGGGAGaggUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 183555 0.79 0.351471
Target:  5'- uGGgGGAguGAGGUcACCCgUCUCCGGGCAGa -3'
miRNA:   3'- -CCgCCU--CUUUA-UGGG-AGAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 66559 0.66 0.962711
Target:  5'- gGGCGGGGu-GUGCCCcacgC-CCGGGguCAGg -3'
miRNA:   3'- -CCGCCUCuuUAUGGGa---GaGGUCC--GUC- -5'
4036 5' -54.4 NC_001650.1 + 96200 0.67 0.951496
Target:  5'- cGGCGaGAGA---GCCa--UCCGGGCAa -3'
miRNA:   3'- -CCGC-CUCUuuaUGGgagAGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 156913 0.67 0.94288
Target:  5'- --aGGAGAGccGUGCCCUCUUgcGGCAc -3'
miRNA:   3'- ccgCCUCUU--UAUGGGAGAGguCCGUc -5'
4036 5' -54.4 NC_001650.1 + 67428 0.67 0.938221
Target:  5'- uGGCGauGAGGA--GCCCcggUCUCCAGaGCAu -3'
miRNA:   3'- -CCGC--CUCUUuaUGGG---AGAGGUC-CGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.