miRNA display CGI


Results 81 - 100 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4036 5' -54.4 NC_001650.1 + 117175 0.67 0.94288
Target:  5'- aGGgGGAGA----CCCUCUCCAGa--- -3'
miRNA:   3'- -CCgCCUCUuuauGGGAGAGGUCcguc -5'
4036 5' -54.4 NC_001650.1 + 181775 0.67 0.94288
Target:  5'- uGGgGGGGAAGggacgGCCCcgcccgcuuccUCUuuacagacCCGGGCAGg -3'
miRNA:   3'- -CCgCCUCUUUa----UGGG-----------AGA--------GGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 120757 0.67 0.947304
Target:  5'- gGGCauagaGGAGAuc-ACCUUCUCCuucuGGCAc -3'
miRNA:   3'- -CCG-----CCUCUuuaUGGGAGAGGu---CCGUc -5'
4036 5' -54.4 NC_001650.1 + 148919 0.67 0.951496
Target:  5'- uGGUGGGGugacacuGGaGCCCgUCUCcCGGGCAa -3'
miRNA:   3'- -CCGCCUCu------UUaUGGG-AGAG-GUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 71992 0.67 0.951496
Target:  5'- gGGCGGGGcg--GCCgUCUCCAaGG-AGg -3'
miRNA:   3'- -CCGCCUCuuuaUGGgAGAGGU-CCgUC- -5'
4036 5' -54.4 NC_001650.1 + 129156 0.66 0.953901
Target:  5'- gGGCGGcccucuucGCCCUCUCgGaGGCGGu -3'
miRNA:   3'- -CCGCCucuuua--UGGGAGAGgU-CCGUC- -5'
4036 5' -54.4 NC_001650.1 + 23663 0.66 0.955458
Target:  5'- aGGgGGAGGucuuUACCCUCcugacCCGGuGCAa -3'
miRNA:   3'- -CCgCCUCUuu--AUGGGAGa----GGUC-CGUc -5'
4036 5' -54.4 NC_001650.1 + 50241 0.66 0.955458
Target:  5'- gGGCGGGGAccaugcgcgacaGggGCgCCUCUCUgcgcccgggagcGGGCGGc -3'
miRNA:   3'- -CCGCCUCU------------UuaUG-GGAGAGG------------UCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 170783 0.67 0.938221
Target:  5'- -aUGGAGAG--GCCCUg-CCAGGCAu -3'
miRNA:   3'- ccGCCUCUUuaUGGGAgaGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 4076 0.67 0.938221
Target:  5'- -aUGGAGAG--GCCCUg-CCAGGCAu -3'
miRNA:   3'- ccGCCUCUUuaUGGGAgaGGUCCGUc -5'
4036 5' -54.4 NC_001650.1 + 88477 0.68 0.898962
Target:  5'- aGGCaGGAGuu---CUC-CUCCGGGCGGg -3'
miRNA:   3'- -CCG-CCUCuuuauGGGaGAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 50556 0.68 0.905278
Target:  5'- uGGCGGuGGAGUGCCCgcgCaacCCGGuCAGg -3'
miRNA:   3'- -CCGCCuCUUUAUGGGa--Ga--GGUCcGUC- -5'
4036 5' -54.4 NC_001650.1 + 145753 0.68 0.911362
Target:  5'- uGGCGGGcAGGUccGCCgggUUCCAGGCGGu -3'
miRNA:   3'- -CCGCCUcUUUA--UGGga-GAGGUCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 86591 0.68 0.911362
Target:  5'- cGuCGGAGGA--GCCCUCcUCCAGGa-- -3'
miRNA:   3'- cC-GCCUCUUuaUGGGAG-AGGUCCguc -5'
4036 5' -54.4 NC_001650.1 + 87022 0.68 0.922819
Target:  5'- --gGGAGAAG-ACCagcaUCUCCAGGCc- -3'
miRNA:   3'- ccgCCUCUUUaUGGg---AGAGGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 43303 0.68 0.928191
Target:  5'- aGGUGGuuGAAAauCCCUCUCUAuuGGCAc -3'
miRNA:   3'- -CCGCCu-CUUUauGGGAGAGGU--CCGUc -5'
4036 5' -54.4 NC_001650.1 + 122666 0.68 0.928191
Target:  5'- aGGCGGucaAGGAG-ACCCUC-CUGGGCu- -3'
miRNA:   3'- -CCGCC---UCUUUaUGGGAGaGGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 136630 0.68 0.928191
Target:  5'- gGGCGucGggGcGCCCUgaggCUCCgcGGGCAGa -3'
miRNA:   3'- -CCGCcuCuuUaUGGGA----GAGG--UCCGUC- -5'
4036 5' -54.4 NC_001650.1 + 151353 0.68 0.928191
Target:  5'- uGGUGGAGGAGgaucuuUAUUgUCUUCAGGCu- -3'
miRNA:   3'- -CCGCCUCUUU------AUGGgAGAGGUCCGuc -5'
4036 5' -54.4 NC_001650.1 + 67523 0.67 0.933325
Target:  5'- aGGgGGAGGcgacgGAUGCCC-CgagCGGGCGGg -3'
miRNA:   3'- -CCgCCUCU-----UUAUGGGaGag-GUCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.