miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 35801 0.66 0.79826
Target:  5'- uGCGcGGCGGcCGU--CCCGCGCCaggggggcgcgGCCa -3'
miRNA:   3'- -CGU-CUGCCaGCGuuGGGCGCGG-----------CGGg -5'
4037 3' -60.9 NC_001650.1 + 115649 0.66 0.79826
Target:  5'- -aAGAuCGcGU-GCGAccCCCGCGgCGCCCg -3'
miRNA:   3'- cgUCU-GC-CAgCGUU--GGGCGCgGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 27412 0.66 0.79826
Target:  5'- aGCAGGCGGU-GCAcgugcACUCGCaGCUGUUUu -3'
miRNA:   3'- -CGUCUGCCAgCGU-----UGGGCG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 121206 0.66 0.79741
Target:  5'- gGCGGACGGUgGaGGCCUuccuggaGCGgUGCCUc -3'
miRNA:   3'- -CGUCUGCCAgCgUUGGG-------CGCgGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 125050 0.66 0.794854
Target:  5'- cCGGGCGGggcgccUCGCccggccaucggguACCCGUGagCGCCCg -3'
miRNA:   3'- cGUCUGCC------AGCGu------------UGGGCGCg-GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 104492 0.66 0.793143
Target:  5'- uUAGGaaGUCuGCccagagcccuacguGCCCGCGCuCGCCCg -3'
miRNA:   3'- cGUCUgcCAG-CGu-------------UGGGCGCG-GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 86002 0.66 0.789705
Target:  5'- cGCuAGACaG-CGCcugcgagauACCCGUGCUGCUCa -3'
miRNA:   3'- -CG-UCUGcCaGCGu--------UGGGCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 123589 0.66 0.789705
Target:  5'- -gAGACGGUgGCccCCCucaaccggcaggGCGCCuacGCCCc -3'
miRNA:   3'- cgUCUGCCAgCGuuGGG------------CGCGG---CGGG- -5'
4037 3' -60.9 NC_001650.1 + 41212 0.66 0.789705
Target:  5'- cGCAGAUGGagGCggUCC-UGuuGCUCu -3'
miRNA:   3'- -CGUCUGCCagCGuuGGGcGCggCGGG- -5'
4037 3' -60.9 NC_001650.1 + 50371 0.66 0.789705
Target:  5'- aGCAGAgGGUgaccUGUggUCUGgaGCCGCCg -3'
miRNA:   3'- -CGUCUgCCA----GCGuuGGGCg-CGGCGGg -5'
4037 3' -60.9 NC_001650.1 + 59314 0.66 0.781024
Target:  5'- uCGGA-GG-CGguGCCCGCGUCuCCCc -3'
miRNA:   3'- cGUCUgCCaGCguUGGGCGCGGcGGG- -5'
4037 3' -60.9 NC_001650.1 + 59036 0.66 0.781024
Target:  5'- gGCGGGaucuucUGGcCGCcuuCCCGCGuCCGUCUg -3'
miRNA:   3'- -CGUCU------GCCaGCGuu-GGGCGC-GGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 155042 0.66 0.781024
Target:  5'- gGUAGGCGGccgaggggUCGCAgagcagGCCCagGUGCCuGCCg -3'
miRNA:   3'- -CGUCUGCC--------AGCGU------UGGG--CGCGG-CGGg -5'
4037 3' -60.9 NC_001650.1 + 164810 0.66 0.78015
Target:  5'- cGCcGGCGGcCGCGAgcagaccCCCGCGgcaaaCGUCCc -3'
miRNA:   3'- -CGuCUGCCaGCGUU-------GGGCGCg----GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 95219 0.66 0.772224
Target:  5'- -gGGGCGGgaagCGCGACCCcuCGCgGCaggCCg -3'
miRNA:   3'- cgUCUGCCa---GCGUUGGGc-GCGgCG---GG- -5'
4037 3' -60.9 NC_001650.1 + 136881 0.66 0.772224
Target:  5'- uCGGGCGGg-GCGACCCGgGCU-CCa -3'
miRNA:   3'- cGUCUGCCagCGUUGGGCgCGGcGGg -5'
4037 3' -60.9 NC_001650.1 + 139120 0.66 0.772224
Target:  5'- ---cGCGGcCGCAAgCCGCaGCcCGCUCa -3'
miRNA:   3'- cgucUGCCaGCGUUgGGCG-CG-GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 58003 0.66 0.772224
Target:  5'- cGC-GACGacUCGCucCUCGCccGCCGCCCc -3'
miRNA:   3'- -CGuCUGCc-AGCGuuGGGCG--CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 30531 0.66 0.772224
Target:  5'- uGCuucGCGGagGCGGCCa-UGCUGCCCa -3'
miRNA:   3'- -CGuc-UGCCagCGUUGGgcGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 57957 0.66 0.772224
Target:  5'- aGCuGGGCGGgaggCGCGGCCggggcgucgaUGgGCUGUCCg -3'
miRNA:   3'- -CG-UCUGCCa---GCGUUGG----------GCgCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.