miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 47986 0.66 0.753389
Target:  5'- -aAGAUGG-CGCAggacuacGCCCcgGgGCCGCUCa -3'
miRNA:   3'- cgUCUGCCaGCGU-------UGGG--CgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 119102 0.66 0.754296
Target:  5'- uGUAGACGGggacggGCAugCCcagauGCGCgGCCg -3'
miRNA:   3'- -CGUCUGCCag----CGUugGG-----CGCGgCGGg -5'
4037 3' -60.9 NC_001650.1 + 81607 0.66 0.771338
Target:  5'- cGCGa--GGUCGCcgcacagGGCgCGCGCCGCgCg -3'
miRNA:   3'- -CGUcugCCAGCG-------UUGgGCGCGGCGgG- -5'
4037 3' -60.9 NC_001650.1 + 67546 0.66 0.763312
Target:  5'- aGCGGGCGG-----GCUCGCGCgCGCUCu -3'
miRNA:   3'- -CGUCUGCCagcguUGGGCGCG-GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 125050 0.66 0.794854
Target:  5'- cCGGGCGGggcgccUCGCccggccaucggguACCCGUGagCGCCCg -3'
miRNA:   3'- cGUCUGCC------AGCGu------------UGGGCGCg-GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 114942 0.66 0.763312
Target:  5'- gGUGGACGGUCuu-GCUgGCcUCGCCCa -3'
miRNA:   3'- -CGUCUGCCAGcguUGGgCGcGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 155042 0.66 0.781024
Target:  5'- gGUAGGCGGccgaggggUCGCAgagcagGCCCagGUGCCuGCCg -3'
miRNA:   3'- -CGUCUGCC--------AGCGU------UGGG--CGCGG-CGGg -5'
4037 3' -60.9 NC_001650.1 + 100103 0.66 0.763312
Target:  5'- uGCGGACGGccUCGC-ACgC-CGCCGCg- -3'
miRNA:   3'- -CGUCUGCC--AGCGuUGgGcGCGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 164810 0.66 0.78015
Target:  5'- cGCcGGCGGcCGCGAgcagaccCCCGCGgcaaaCGUCCc -3'
miRNA:   3'- -CGuCUGCCaGCGUU-------GGGCGCg----GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 117912 0.66 0.763312
Target:  5'- cGCAGAgguUGG-CGUAGCUgaugGCGuuGCCCu -3'
miRNA:   3'- -CGUCU---GCCaGCGUUGGg---CGCggCGGG- -5'
4037 3' -60.9 NC_001650.1 + 100547 0.66 0.760618
Target:  5'- cGCGGAUGaGaUCGCGcagggccucgucgcACCCGCcgGCCGCg- -3'
miRNA:   3'- -CGUCUGC-C-AGCGU--------------UGGGCG--CGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 117745 0.66 0.762415
Target:  5'- aGCAGAacuccaGGUCGgguucaggggcgaCAGCCgGuCGgCGCCCu -3'
miRNA:   3'- -CGUCUg-----CCAGC-------------GUUGGgC-GCgGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 118736 0.66 0.745184
Target:  5'- uGCAGcGCGcucUCGUAcaccGCCCccCGCCGCCCc -3'
miRNA:   3'- -CGUC-UGCc--AGCGU----UGGGc-GCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 86002 0.66 0.789705
Target:  5'- cGCuAGACaG-CGCcugcgagauACCCGUGCUGCUCa -3'
miRNA:   3'- -CG-UCUGcCaGCGu--------UGGGCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 115649 0.66 0.79826
Target:  5'- -aAGAuCGcGU-GCGAccCCCGCGgCGCCCg -3'
miRNA:   3'- cgUCU-GC-CAgCGUU--GGGCGCgGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 121206 0.66 0.79741
Target:  5'- gGCGGACGGUgGaGGCCUuccuggaGCGgUGCCUc -3'
miRNA:   3'- -CGUCUGCCAgCgUUGGG-------CGCgGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 68897 0.66 0.762415
Target:  5'- uGUAGACGGccaugCGCGGCggguacaCGUaccagcgcucuacGCCGCCCc -3'
miRNA:   3'- -CGUCUGCCa----GCGUUGg------GCG-------------CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 93530 0.66 0.754296
Target:  5'- aGCGGcGCGGUgcccugCGUggUCUGCGUgggguCGCCCa -3'
miRNA:   3'- -CGUC-UGCCA------GCGuuGGGCGCG-----GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 135602 0.66 0.757915
Target:  5'- cGCAcuCGG-CGCAcaccacagcuagccuGgcgCCCGCGCCGUCCc -3'
miRNA:   3'- -CGUcuGCCaGCGU---------------U---GGGCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 30531 0.66 0.772224
Target:  5'- uGCuucGCGGagGCGGCCa-UGCUGCCCa -3'
miRNA:   3'- -CGuc-UGCCagCGUUGGgcGCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.