miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 178884 0.66 0.745184
Target:  5'- -aAGAUGGcCGCcuccccACCaCGUgGCCGCCCc -3'
miRNA:   3'- cgUCUGCCaGCGu-----UGG-GCG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 76013 0.66 0.754296
Target:  5'- cGCGGACucgaGGUCGUca--CGCGCCagcuucuuGCCCa -3'
miRNA:   3'- -CGUCUG----CCAGCGuuggGCGCGG--------CGGG- -5'
4037 3' -60.9 NC_001650.1 + 35801 0.66 0.79826
Target:  5'- uGCGcGGCGGcCGU--CCCGCGCCaggggggcgcgGCCa -3'
miRNA:   3'- -CGU-CUGCCaGCGuuGGGCGCGG-----------CGGg -5'
4037 3' -60.9 NC_001650.1 + 100973 0.66 0.763312
Target:  5'- cGC-GAcCGcGUCGCAgagcuucucgacGCgCGCGaCCGCCCc -3'
miRNA:   3'- -CGuCU-GC-CAGCGU------------UGgGCGC-GGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 125050 0.66 0.794854
Target:  5'- cCGGGCGGggcgccUCGCccggccaucggguACCCGUGagCGCCCg -3'
miRNA:   3'- cGUCUGCC------AGCGu------------UGGGCGCg-GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 115649 0.66 0.79826
Target:  5'- -aAGAuCGcGU-GCGAccCCCGCGgCGCCCg -3'
miRNA:   3'- cgUCU-GC-CAgCGUU--GGGCGCgGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 68897 0.66 0.762415
Target:  5'- uGUAGACGGccaugCGCGGCggguacaCGUaccagcgcucuacGCCGCCCc -3'
miRNA:   3'- -CGUCUGCCa----GCGUUGg------GCG-------------CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 117912 0.66 0.763312
Target:  5'- cGCAGAgguUGG-CGUAGCUgaugGCGuuGCCCu -3'
miRNA:   3'- -CGUCU---GCCaGCGUUGGg---CGCggCGGG- -5'
4037 3' -60.9 NC_001650.1 + 164810 0.66 0.78015
Target:  5'- cGCcGGCGGcCGCGAgcagaccCCCGCGgcaaaCGUCCc -3'
miRNA:   3'- -CGuCUGCCaGCGUU-------GGGCGCg----GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 86002 0.66 0.789705
Target:  5'- cGCuAGACaG-CGCcugcgagauACCCGUGCUGCUCa -3'
miRNA:   3'- -CG-UCUGcCaGCGu--------UGGGCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 58003 0.66 0.772224
Target:  5'- cGC-GACGacUCGCucCUCGCccGCCGCCCc -3'
miRNA:   3'- -CGuCUGCc-AGCGuuGGGCG--CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 136881 0.66 0.772224
Target:  5'- uCGGGCGGg-GCGACCCGgGCU-CCa -3'
miRNA:   3'- cGUCUGCCagCGUUGGGCgCGGcGGg -5'
4037 3' -60.9 NC_001650.1 + 41049 0.66 0.760618
Target:  5'- aGCAGAgGGUCucgcacguacacgaGCGAgUCC-CGCUGCCUg -3'
miRNA:   3'- -CGUCUgCCAG--------------CGUU-GGGcGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 75332 0.66 0.745184
Target:  5'- cGCAGGCGGUga-GGCgCGCGUCcuccauGCCCu -3'
miRNA:   3'- -CGUCUGCCAgcgUUGgGCGCGG------CGGG- -5'
4037 3' -60.9 NC_001650.1 + 61908 0.66 0.763312
Target:  5'- -aAGGCGGcCGCGgcgGCCagcugcucgCGCGCCGCg- -3'
miRNA:   3'- cgUCUGCCaGCGU---UGG---------GCGCGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 121206 0.66 0.79741
Target:  5'- gGCGGACGGUgGaGGCCUuccuggaGCGgUGCCUc -3'
miRNA:   3'- -CGUCUGCCAgCgUUGGG-------CGCgGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 117715 0.66 0.745184
Target:  5'- -gAGACGGUcCGgGGCCUGCGgUGCa- -3'
miRNA:   3'- cgUCUGCCA-GCgUUGGGCGCgGCGgg -5'
4037 3' -60.9 NC_001650.1 + 27412 0.66 0.79826
Target:  5'- aGCAGGCGGU-GCAcgugcACUCGCaGCUGUUUu -3'
miRNA:   3'- -CGUCUGCCAgCGU-----UGGGCG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 118935 0.66 0.763312
Target:  5'- uGUAGGCGGuguagauaUCGUccauGAUCUcaGCgGCCGCCCa -3'
miRNA:   3'- -CGUCUGCC--------AGCG----UUGGG--CG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 94352 0.66 0.745184
Target:  5'- -gGGACucUCGCcacGACCCGCaCCGCCUc -3'
miRNA:   3'- cgUCUGccAGCG---UUGGGCGcGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.