miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 57957 0.66 0.772224
Target:  5'- aGCuGGGCGGgaggCGCGGCCggggcgucgaUGgGCUGUCCg -3'
miRNA:   3'- -CG-UCUGCCa---GCGUUGG----------GCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 30531 0.66 0.772224
Target:  5'- uGCuucGCGGagGCGGCCa-UGCUGCCCa -3'
miRNA:   3'- -CGuc-UGCCagCGUUGGgcGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 81607 0.66 0.771338
Target:  5'- cGCGa--GGUCGCcgcacagGGCgCGCGCCGCgCg -3'
miRNA:   3'- -CGUcugCCAGCG-------UUGgGCGCGGCGgG- -5'
4037 3' -60.9 NC_001650.1 + 100103 0.66 0.763312
Target:  5'- uGCGGACGGccUCGC-ACgC-CGCCGCg- -3'
miRNA:   3'- -CGUCUGCC--AGCGuUGgGcGCGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 117912 0.66 0.763312
Target:  5'- cGCAGAgguUGG-CGUAGCUgaugGCGuuGCCCu -3'
miRNA:   3'- -CGUCU---GCCaGCGUUGGg---CGCggCGGG- -5'
4037 3' -60.9 NC_001650.1 + 114942 0.66 0.763312
Target:  5'- gGUGGACGGUCuu-GCUgGCcUCGCCCa -3'
miRNA:   3'- -CGUCUGCCAGcguUGGgCGcGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 68897 0.66 0.762415
Target:  5'- uGUAGACGGccaugCGCGGCggguacaCGUaccagcgcucuacGCCGCCCc -3'
miRNA:   3'- -CGUCUGCCa----GCGUUGg------GCG-------------CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 121455 0.67 0.694649
Target:  5'- aGCAGAucaccgucuuCGGgCGCcacuuuuacgaguGCCUGCGCCGCUg -3'
miRNA:   3'- -CGUCU----------GCCaGCGu------------UGGGCGCGGCGGg -5'
4037 3' -60.9 NC_001650.1 + 25370 0.67 0.697504
Target:  5'- -gAGGgGGUuaagagcCGCGACCCGCucCCGUCCc -3'
miRNA:   3'- cgUCUgCCA-------GCGUUGGGCGc-GGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 81738 0.67 0.717349
Target:  5'- uGCAGuACGaGUC-CAGCaCCGCGCUGUa- -3'
miRNA:   3'- -CGUC-UGC-CAGcGUUG-GGCGCGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 129053 0.67 0.688928
Target:  5'- -gAGGCGGUgGCcGCgCGCGaccCCGCCa -3'
miRNA:   3'- cgUCUGCCAgCGuUGgGCGC---GGCGGg -5'
4037 3' -60.9 NC_001650.1 + 77865 0.67 0.688928
Target:  5'- gGCAGAgGGUgGagaAGgCCGCGCUgGUCCu -3'
miRNA:   3'- -CGUCUgCCAgCg--UUgGGCGCGG-CGGG- -5'
4037 3' -60.9 NC_001650.1 + 158375 0.67 0.726703
Target:  5'- uCAGcGCGGUgGCGGguaccucuccccUCUGgGCCGCCCc -3'
miRNA:   3'- cGUC-UGCCAgCGUU------------GGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 115127 0.67 0.735984
Target:  5'- aCAGACGcUCGCcucCCUGUGCgCGCUCc -3'
miRNA:   3'- cGUCUGCcAGCGuu-GGGCGCG-GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 121269 0.67 0.725771
Target:  5'- uGCAGACGGcCugcuccaacaagaGCcACCUGuCcCCGCCCg -3'
miRNA:   3'- -CGUCUGCCaG-------------CGuUGGGC-GcGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 41581 0.67 0.735984
Target:  5'- cGCAG-CaGcCGCAGCCCccucCGCCGgCCu -3'
miRNA:   3'- -CGUCuGcCaGCGUUGGGc---GCGGCgGG- -5'
4037 3' -60.9 NC_001650.1 + 109431 0.67 0.726703
Target:  5'- gGUAGAUGGcCagguuauccaGCAgGCCCaGCauGCCGCCCg -3'
miRNA:   3'- -CGUCUGCCaG----------CGU-UGGG-CG--CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 162537 0.67 0.717349
Target:  5'- -uGGACaGGgUGCAGggccccCCCGCGCCGUCg -3'
miRNA:   3'- cgUCUG-CCaGCGUU------GGGCGCGGCGGg -5'
4037 3' -60.9 NC_001650.1 + 83759 0.67 0.697504
Target:  5'- --uGAgGGUCaGguACCCcggguacGCGCCGUCCg -3'
miRNA:   3'- cguCUgCCAG-CguUGGG-------CGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 117287 0.67 0.698454
Target:  5'- -aGGACGc-CGCcAUCCGCGCCccgGCCCc -3'
miRNA:   3'- cgUCUGCcaGCGuUGGGCGCGG---CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.