miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 41581 0.67 0.735984
Target:  5'- cGCAG-CaGcCGCAGCCCccucCGCCGgCCu -3'
miRNA:   3'- -CGUCuGcCaGCGUUGGGc---GCGGCgGG- -5'
4037 3' -60.9 NC_001650.1 + 162537 0.67 0.717349
Target:  5'- -uGGACaGGgUGCAGggccccCCCGCGCCGUCg -3'
miRNA:   3'- cgUCUG-CCaGCGUU------GGGCGCGGCGGg -5'
4037 3' -60.9 NC_001650.1 + 111523 0.67 0.70793
Target:  5'- --cGugGGUgGCGA-CCGC-CUGCCCa -3'
miRNA:   3'- cguCugCCAgCGUUgGGCGcGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 108918 0.67 0.706039
Target:  5'- cGCAGGgGGgCGCuguuccagguuuGCgCGCGCCucGCCCu -3'
miRNA:   3'- -CGUCUgCCaGCGu-----------UGgGCGCGG--CGGG- -5'
4037 3' -60.9 NC_001650.1 + 117287 0.67 0.698454
Target:  5'- -aGGACGc-CGCcAUCCGCGCCccgGCCCc -3'
miRNA:   3'- cgUCUGCcaGCGuUGGGCGCGG---CGGG- -5'
4037 3' -60.9 NC_001650.1 + 83759 0.67 0.697504
Target:  5'- --uGAgGGUCaGguACCCcggguacGCGCCGUCCg -3'
miRNA:   3'- cguCUgCCAG-CguUGGG-------CGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 108785 0.67 0.698454
Target:  5'- cGCGG-CGcUCGCuuCCuCGC-CCGCCCc -3'
miRNA:   3'- -CGUCuGCcAGCGuuGG-GCGcGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 109431 0.67 0.726703
Target:  5'- gGUAGAUGGcCagguuauccaGCAgGCCCaGCauGCCGCCCg -3'
miRNA:   3'- -CGUCUGCCaG----------CGU-UGGG-CG--CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 82376 0.67 0.726703
Target:  5'- aUAGGCGGUCGCcugcuggagcACCUGCuGCUGCggCCu -3'
miRNA:   3'- cGUCUGCCAGCGu---------UGGGCG-CGGCG--GG- -5'
4037 3' -60.9 NC_001650.1 + 160465 0.67 0.70793
Target:  5'- uCGGGCGGgucucCGCccCCCGCG-CGCCg -3'
miRNA:   3'- cGUCUGCCa----GCGuuGGGCGCgGCGGg -5'
4037 3' -60.9 NC_001650.1 + 52386 0.67 0.726703
Target:  5'- gGguGAC-GUCgGCGGCCgGCcaCCGCCCc -3'
miRNA:   3'- -CguCUGcCAG-CGUUGGgCGc-GGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 158375 0.67 0.726703
Target:  5'- uCAGcGCGGUgGCGGguaccucuccccUCUGgGCCGCCCc -3'
miRNA:   3'- cGUC-UGCCAgCGUU------------GGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 62038 0.68 0.650478
Target:  5'- cGUGGAagUGGUCcaGCAgguuGCCCaggGCGCCGCCg -3'
miRNA:   3'- -CGUCU--GCCAG--CGU----UGGG---CGCGGCGGg -5'
4037 3' -60.9 NC_001650.1 + 122664 0.68 0.67936
Target:  5'- cCAGGCGGUCaaggaGACCCuccuGgGCUGCCUg -3'
miRNA:   3'- cGUCUGCCAGcg---UUGGG----CgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 129377 0.68 0.631146
Target:  5'- cCAGugGGggUGCAgaacccaguACCCGCGCgaGCCg -3'
miRNA:   3'- cGUCugCCa-GCGU---------UGGGCGCGg-CGGg -5'
4037 3' -60.9 NC_001650.1 + 93357 0.68 0.669758
Target:  5'- aGCAccuGACGGggGCGGCCUuugggGCGCUGgCCa -3'
miRNA:   3'- -CGU---CUGCCagCGUUGGG-----CGCGGCgGG- -5'
4037 3' -60.9 NC_001650.1 + 132950 0.68 0.669758
Target:  5'- ---cGCGG-CGCGAgcccuccgguggUCCGCGCuCGCCCg -3'
miRNA:   3'- cgucUGCCaGCGUU------------GGGCGCG-GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 66409 0.68 0.669758
Target:  5'- aGCAGGaGGgugUGCgGGCCCGUGgaGCCCg -3'
miRNA:   3'- -CGUCUgCCa--GCG-UUGGGCGCggCGGG- -5'
4037 3' -60.9 NC_001650.1 + 126962 0.68 0.640815
Target:  5'- gGCAuGCGGggCGCAGCa-GCaacaGCCGCCCc -3'
miRNA:   3'- -CGUcUGCCa-GCGUUGggCG----CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 50056 0.68 0.631146
Target:  5'- cGC-GugGGgaggGCcGCCCGCGgUCGCCCc -3'
miRNA:   3'- -CGuCugCCag--CGuUGGGCGC-GGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.