Results 101 - 120 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 73676 | 0.69 | 0.611816 |
Target: 5'- cGgGGGCGGcUGUuGCUCGCGC-GCCCg -3' miRNA: 3'- -CgUCUGCCaGCGuUGGGCGCGgCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 135007 | 0.69 | 0.580065 |
Target: 5'- cGCAGGgGGgugagcaccaggCGCAGCUcgcccucggccagCGCGCgGCCCu -3' miRNA: 3'- -CGUCUgCCa-----------GCGUUGG-------------GCGCGgCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 146970 | 0.69 | 0.573369 |
Target: 5'- gGCAu-CGGgggCGCAcuccACCCGC-CUGCCCa -3' miRNA: 3'- -CGUcuGCCa--GCGU----UGGGCGcGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 19565 | 0.69 | 0.573369 |
Target: 5'- cGCGGucccacCGGgagccCGgGugCCGCGCgGCCCg -3' miRNA: 3'- -CGUCu-----GCCa----GCgUugGGCGCGgCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 108955 | 0.69 | 0.592541 |
Target: 5'- aGCAGcugucCGuGUCcagGCAcgaguacuuuaACCCGCGCCuGCCCg -3' miRNA: 3'- -CGUCu----GC-CAG---CGU-----------UGGGCGCGG-CGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 156229 | 0.69 | 0.573369 |
Target: 5'- aGCAGGCGaucagccccccGUCGCucacgucguGGCCCGCGgucaCCaGCCCg -3' miRNA: 3'- -CGUCUGC-----------CAGCG---------UUGGGCGC----GG-CGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 60537 | 0.69 | 0.608921 |
Target: 5'- gGCGG-CGGUCuGUuuGguguuggggaacauGCCCGCGUCGCUCa -3' miRNA: 3'- -CGUCuGCCAG-CG--U--------------UGGGCGCGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 143651 | 0.69 | 0.611816 |
Target: 5'- cGCaAGACG--CGCgAGCCCGCGUCcCCCg -3' miRNA: 3'- -CG-UCUGCcaGCG-UUGGGCGCGGcGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 124373 | 0.69 | 0.621478 |
Target: 5'- cGCcGGgGGUCGCGcCCaugaGCGaggaCCGCCCg -3' miRNA: 3'- -CGuCUgCCAGCGUuGGg---CGC----GGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 102589 | 0.69 | 0.582939 |
Target: 5'- --uGACGGgggaGCuGGCCCGCGCggcgcgCGCCCu -3' miRNA: 3'- cguCUGCCag--CG-UUGGGCGCG------GCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 56999 | 0.69 | 0.592541 |
Target: 5'- gGCcauGuCGGUCaGCAuguCCUcCGCCGCCCg -3' miRNA: 3'- -CGu--CuGCCAG-CGUu--GGGcGCGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 153414 | 0.69 | 0.592541 |
Target: 5'- aGCucuCGGUCaGCAcGCgCaGCGCCGCCCc -3' miRNA: 3'- -CGucuGCCAG-CGU-UGgG-CGCGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 114899 | 0.69 | 0.611816 |
Target: 5'- -gAGGgGGUCGCGcgggaccgGCCUGCGCgCGaCCUg -3' miRNA: 3'- cgUCUgCCAGCGU--------UGGGCGCG-GC-GGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 147997 | 0.69 | 0.611816 |
Target: 5'- uCAGGuucaGGUUGUAcACCUGCGUgGCCCu -3' miRNA: 3'- cGUCUg---CCAGCGU-UGGGCGCGgCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 122727 | 0.69 | 0.621478 |
Target: 5'- uGCAGGCGGccaggaaaagaUgGCcGCCaGCGUCGCCUu -3' miRNA: 3'- -CGUCUGCC-----------AgCGuUGGgCGCGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 131395 | 0.69 | 0.582939 |
Target: 5'- gGCGGGCaGGgCGCcgagAACgCCGCGCCcGUCCu -3' miRNA: 3'- -CGUCUG-CCaGCG----UUG-GGCGCGG-CGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 129094 | 0.69 | 0.621478 |
Target: 5'- cGC-GACGGgcUCGCu-CCCGCGCUuCCUg -3' miRNA: 3'- -CGuCUGCC--AGCGuuGGGCGCGGcGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 111442 | 0.69 | 0.621478 |
Target: 5'- -gAGGCGG-CGCGagGCCaGC-CCGCCCu -3' miRNA: 3'- cgUCUGCCaGCGU--UGGgCGcGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 102443 | 0.69 | 0.621478 |
Target: 5'- uGCAGcCGugcGUCGU-GCCCGUccagcagcagGCCGCCCa -3' miRNA: 3'- -CGUCuGC---CAGCGuUGGGCG----------CGGCGGG- -5' |
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4037 | 3' | -60.9 | NC_001650.1 | + | 110538 | 0.69 | 0.621478 |
Target: 5'- aGCAG-CGGgcgCGCGAgCaacaGCCGCCCc -3' miRNA: 3'- -CGUCuGCCa--GCGUUgGgcg-CGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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