Results 81 - 100 of 188 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 60537 | 0.69 | 0.608921 |
Target: 5'- gGCGG-CGGUCuGUuuGguguuggggaacauGCCCGCGUCGCUCa -3' miRNA: 3'- -CGUCuGCCAG-CG--U--------------UGGGCGCGGCGGG- -5' |
|||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 56368 | 0.69 | 0.598315 |
Target: 5'- cCAGGCGcUCGCccacgggcgaaCCGgGCCGCCCu -3' miRNA: 3'- cGUCUGCcAGCGuug--------GGCgCGGCGGG- -5' |
|||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 153414 | 0.69 | 0.592541 |
Target: 5'- aGCucuCGGUCaGCAcGCgCaGCGCCGCCCc -3' miRNA: 3'- -CGucuGCCAG-CGU-UGgG-CGCGGCGGG- -5' |
|||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 19565 | 0.69 | 0.573369 |
Target: 5'- cGCGGucccacCGGgagccCGgGugCCGCGCgGCCCg -3' miRNA: 3'- -CGUCu-----GCCa----GCgUugGGCGCGgCGGG- -5' |
|||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 135007 | 0.69 | 0.580065 |
Target: 5'- cGCAGGgGGgugagcaccaggCGCAGCUcgcccucggccagCGCGCgGCCCu -3' miRNA: 3'- -CGUCUgCCa-----------GCGUUGG-------------GCGCGgCGGG- -5' |
|||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 131395 | 0.69 | 0.582939 |
Target: 5'- gGCGGGCaGGgCGCcgagAACgCCGCGCCcGUCCu -3' miRNA: 3'- -CGUCUG-CCaGCG----UUG-GGCGCGG-CGGG- -5' |
|||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 73676 | 0.69 | 0.611816 |
Target: 5'- cGgGGGCGGcUGUuGCUCGCGC-GCCCg -3' miRNA: 3'- -CgUCUGCCaGCGuUGGGCGCGgCGGG- -5' |
|||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 148317 | 0.69 | 0.611816 |
Target: 5'- -aGGAC-GUUGUAGCCCGgccaGuCCGCCCg -3' miRNA: 3'- cgUCUGcCAGCGUUGGGCg---C-GGCGGG- -5' |
|||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 109340 | 0.69 | 0.602169 |
Target: 5'- -aAGAUGuUCaGCAGCUCGUGCUGCUCg -3' miRNA: 3'- cgUCUGCcAG-CGUUGGGCGCGGCGGG- -5' |
|||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 146970 | 0.69 | 0.573369 |
Target: 5'- gGCAu-CGGgggCGCAcuccACCCGC-CUGCCCa -3' miRNA: 3'- -CGUcuGCCa--GCGU----UGGGCGcGGCGGG- -5' |
|||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 56999 | 0.69 | 0.592541 |
Target: 5'- gGCcauGuCGGUCaGCAuguCCUcCGCCGCCCg -3' miRNA: 3'- -CGu--CuGCCAG-CGUu--GGGcGCGGCGGG- -5' |
|||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 41503 | 0.69 | 0.602169 |
Target: 5'- -uGGucuCGGcCGCGcCgCCGcCGCCGCCCg -3' miRNA: 3'- cgUCu--GCCaGCGUuG-GGC-GCGGCGGG- -5' |
|||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 102589 | 0.69 | 0.582939 |
Target: 5'- --uGACGGgggaGCuGGCCCGCGCggcgcgCGCCCu -3' miRNA: 3'- cguCUGCCag--CG-UUGGGCGCG------GCGGG- -5' |
|||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 122664 | 0.68 | 0.67936 |
Target: 5'- cCAGGCGGUCaaggaGACCCuccuGgGCUGCCUg -3' miRNA: 3'- cGUCUGCCAGcg---UUGGG----CgCGGCGGG- -5' |
|||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 118049 | 0.68 | 0.631146 |
Target: 5'- gGCAGGCuGGaCGaguaCAGCCCGUGgCGCaCCa -3' miRNA: 3'- -CGUCUG-CCaGC----GUUGGGCGCgGCG-GG- -5' |
|||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 136461 | 0.68 | 0.631146 |
Target: 5'- cGCAGGCccUCGCAcaggGCCCGCaUCaGCCCg -3' miRNA: 3'- -CGUCUGccAGCGU----UGGGCGcGG-CGGG- -5' |
|||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 134149 | 0.68 | 0.660128 |
Target: 5'- cCAGACcaaGGggGCGACCgCGgGCgGCCCu -3' miRNA: 3'- cGUCUG---CCagCGUUGG-GCgCGgCGGG- -5' |
|||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 66409 | 0.68 | 0.669758 |
Target: 5'- aGCAGGaGGgugUGCgGGCCCGUGgaGCCCg -3' miRNA: 3'- -CGUCUgCCa--GCG-UUGGGCGCggCGGG- -5' |
|||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 132950 | 0.68 | 0.669758 |
Target: 5'- ---cGCGG-CGCGAgcccuccgguggUCCGCGCuCGCCCg -3' miRNA: 3'- cgucUGCCaGCGUU------------GGGCGCG-GCGGG- -5' |
|||||||
4037 | 3' | -60.9 | NC_001650.1 | + | 93357 | 0.68 | 0.669758 |
Target: 5'- aGCAccuGACGGggGCGGCCUuugggGCGCUGgCCa -3' miRNA: 3'- -CGU---CUGCCagCGUUGGG-----CGCGGCgGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home