miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 41157 0.74 0.349544
Target:  5'- aGCAGGCGGagcgccucggCGCccUCCGCGUgGCCCg -3'
miRNA:   3'- -CGUCUGCCa---------GCGuuGGGCGCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 131645 0.74 0.349544
Target:  5'- aGCuGGCGGcCGCcuGCCUGCGC-GCCCc -3'
miRNA:   3'- -CGuCUGCCaGCGu-UGGGCGCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 62614 0.74 0.355462
Target:  5'- aGUGGACGGgccacccgagggCGCuGCCCucCGCCGCCCc -3'
miRNA:   3'- -CGUCUGCCa-----------GCGuUGGGc-GCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 66721 0.74 0.356952
Target:  5'- -aGGACGGUguUGUAGCUCGCGgCGCCg -3'
miRNA:   3'- cgUCUGCCA--GCGUUGGGCGCgGCGGg -5'
4037 3' -60.9 NC_001650.1 + 102249 0.73 0.36447
Target:  5'- cCAGACGG-CGCAGCCgGCGCagguGCUg -3'
miRNA:   3'- cGUCUGCCaGCGUUGGgCGCGg---CGGg -5'
4037 3' -60.9 NC_001650.1 + 157571 0.73 0.39562
Target:  5'- gGCAGcuuggagaGGUa-CAGCaCCGCGCCGCCCc -3'
miRNA:   3'- -CGUCug------CCAgcGUUG-GGCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 60098 0.73 0.403671
Target:  5'- cGCcGAgGGUC-UGGCCCGaccCGCCGCCCg -3'
miRNA:   3'- -CGuCUgCCAGcGUUGGGC---GCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 95128 0.73 0.403671
Target:  5'- gGUGGGCGGUCGUccCCCGCGacgaGCCa -3'
miRNA:   3'- -CGUCUGCCAGCGuuGGGCGCgg--CGGg -5'
4037 3' -60.9 NC_001650.1 + 63314 0.72 0.409369
Target:  5'- cGCAGcucGCGG-CGguGCUugggggcguugucgCGCGCCGCCCc -3'
miRNA:   3'- -CGUC---UGCCaGCguUGG--------------GCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 133927 0.72 0.411826
Target:  5'- -uGGGCGcUCGCcgucuccCCCGcCGCCGCCCg -3'
miRNA:   3'- cgUCUGCcAGCGuu-----GGGC-GCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 30920 0.72 0.411826
Target:  5'- cGCGGACaggggcggGGUCGUGgcaccGCCCGCGCgaCGUCCu -3'
miRNA:   3'- -CGUCUG--------CCAGCGU-----UGGGCGCG--GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 153747 0.72 0.420081
Target:  5'- cGCGGGCGGgaugggCGaGACCCcccugaGCCGCCCc -3'
miRNA:   3'- -CGUCUGCCa-----GCgUUGGGcg----CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 68843 0.72 0.436889
Target:  5'- uCGGACGGga-CGugCCGCGCCccggGCCCa -3'
miRNA:   3'- cGUCUGCCagcGUugGGCGCGG----CGGG- -5'
4037 3' -60.9 NC_001650.1 + 155812 0.72 0.436889
Target:  5'- uGUAGAgGGUCaGCuccccGCCCGCGCacgCGUCCu -3'
miRNA:   3'- -CGUCUgCCAG-CGu----UGGGCGCG---GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 21174 0.72 0.436889
Target:  5'- gGCGGGCGG-CGCGGgUUGCGaCCGUCUg -3'
miRNA:   3'- -CGUCUGCCaGCGUUgGGCGC-GGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 52583 0.72 0.436889
Target:  5'- gGCAGGCGGcCGcCAGCUCGgGCCgggugGCCa -3'
miRNA:   3'- -CGUCUGCCaGC-GUUGGGCgCGG-----CGGg -5'
4037 3' -60.9 NC_001650.1 + 51671 0.72 0.436889
Target:  5'- cGgGGGCGcGUCGCccggggGGCgCGCGuuGCCCa -3'
miRNA:   3'- -CgUCUGC-CAGCG------UUGgGCGCggCGGG- -5'
4037 3' -60.9 NC_001650.1 + 133875 0.72 0.444577
Target:  5'- gGCAG-CGGUCGCcucuagaGGCcgccccugggaCCGCGgCGCCCa -3'
miRNA:   3'- -CGUCuGCCAGCG-------UUG-----------GGCGCgGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 133212 0.72 0.445436
Target:  5'- -gAGGgGGcCGCcgcGCCCGCGCC-CCCg -3'
miRNA:   3'- cgUCUgCCaGCGu--UGGGCGCGGcGGG- -5'
4037 3' -60.9 NC_001650.1 + 53197 0.72 0.454076
Target:  5'- cCGGAgccCGGcUCGCGuCCCGgGCgGCCCg -3'
miRNA:   3'- cGUCU---GCC-AGCGUuGGGCgCGgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.