miRNA display CGI


Results 41 - 60 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4037 3' -60.9 NC_001650.1 + 104050 0.72 0.454076
Target:  5'- --uGGCGuGUgCGCuGCCCG-GCCGCCCu -3'
miRNA:   3'- cguCUGC-CA-GCGuUGGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 53197 0.72 0.454076
Target:  5'- cCGGAgccCGGcUCGCGuCCCGgGCgGCCCg -3'
miRNA:   3'- cGUCU---GCC-AGCGUuGGGCgCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 59448 0.71 0.462806
Target:  5'- uGCAGACGGcCc---CCCGCGCcCGUCCc -3'
miRNA:   3'- -CGUCUGCCaGcguuGGGCGCG-GCGGG- -5'
4037 3' -60.9 NC_001650.1 + 72702 0.71 0.462806
Target:  5'- gGCAGGCGGUCGCcACCCaCGagaggGCCa -3'
miRNA:   3'- -CGUCUGCCAGCGuUGGGcGCgg---CGGg -5'
4037 3' -60.9 NC_001650.1 + 72775 0.71 0.471624
Target:  5'- gGCAgGGCGG--GCuGGCCuCGCGCCGCCUc -3'
miRNA:   3'- -CGU-CUGCCagCG-UUGG-GCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 52813 0.71 0.471624
Target:  5'- cGCAgGACGGgCGCGgcguucucggcGCCCuGC-CCGCCCu -3'
miRNA:   3'- -CGU-CUGCCaGCGU-----------UGGG-CGcGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 20688 0.71 0.480525
Target:  5'- aCGGGgGGUCugGugCCGgGCCGCCCc -3'
miRNA:   3'- cGUCUgCCAGcgUugGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 37715 0.71 0.484109
Target:  5'- gGCAGAUugucagagaugacugGGuuucugggcUCGCGgcGCCCGgGCCGCCUa -3'
miRNA:   3'- -CGUCUG---------------CC---------AGCGU--UGGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 133471 0.71 0.489509
Target:  5'- aGCAGGUGGUgGCGgcGCCCacCGCgGCCCu -3'
miRNA:   3'- -CGUCUGCCAgCGU--UGGGc-GCGgCGGG- -5'
4037 3' -60.9 NC_001650.1 + 54170 0.71 0.495843
Target:  5'- gGCGGAUucuagGGUC-CAGucgccgguggagcuCCCGgGCCGCCCa -3'
miRNA:   3'- -CGUCUG-----CCAGcGUU--------------GGGCgCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 22476 0.71 0.498569
Target:  5'- -uGGACGGgagCGCG----GCGCCGCCCg -3'
miRNA:   3'- cgUCUGCCa--GCGUugggCGCGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 98225 0.71 0.498569
Target:  5'- cGCAGGCGcuGUCuaGCGugCCGCGgCC-CCCg -3'
miRNA:   3'- -CGUCUGC--CAG--CGUugGGCGC-GGcGGG- -5'
4037 3' -60.9 NC_001650.1 + 97430 0.71 0.498569
Target:  5'- aGCAGAucuucgUGGcCGcCAACCUGCGCUcCCCg -3'
miRNA:   3'- -CGUCU------GCCaGC-GUUGGGCGCGGcGGG- -5'
4037 3' -60.9 NC_001650.1 + 78783 0.71 0.499479
Target:  5'- gGCAG-CGGggacgagaucgccgcCGCGACCgGCGCUcgGCCCu -3'
miRNA:   3'- -CGUCuGCCa--------------GCGUUGGgCGCGG--CGGG- -5'
4037 3' -60.9 NC_001650.1 + 51257 0.71 0.507704
Target:  5'- cGCGGGCGaG-CGCGgaccaccggaggGCUCGCGCCGCg- -3'
miRNA:   3'- -CGUCUGC-CaGCGU------------UGGGCGCGGCGgg -5'
4037 3' -60.9 NC_001650.1 + 56667 0.71 0.511378
Target:  5'- cGCAGuagccaugggcuaaaAgGGaacaugugcacUCGCGGCCCGCuGCCGCUCg -3'
miRNA:   3'- -CGUC---------------UgCC-----------AGCGUUGGGCG-CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 109275 0.7 0.516909
Target:  5'- aUAGugGGggGCGcCCCGCucGUCGCCCu -3'
miRNA:   3'- cGUCugCCagCGUuGGGCG--CGGCGGG- -5'
4037 3' -60.9 NC_001650.1 + 95464 0.7 0.516909
Target:  5'- cGCAGGCGcGUCgGCcugcCCCGCuuGCCGgCCg -3'
miRNA:   3'- -CGUCUGC-CAG-CGuu--GGGCG--CGGCgGG- -5'
4037 3' -60.9 NC_001650.1 + 104375 0.7 0.516909
Target:  5'- aUAGGCGGUCGCuGCCaagcagGCGa-GCCCa -3'
miRNA:   3'- cGUCUGCCAGCGuUGGg-----CGCggCGGG- -5'
4037 3' -60.9 NC_001650.1 + 22055 0.7 0.526179
Target:  5'- -aAGGCGGaCGC-GCUCGCcaaGCUGCCCg -3'
miRNA:   3'- cgUCUGCCaGCGuUGGGCG---CGGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.